PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16009
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 186aa    MW: 20751.5 Da    PI: 9.2902
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16009genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00114264123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++C+ C++ Fs+   L  H  +H
  Tp57577_TGAC_v2_mRNA16009 42 FECKTCNRQFSSFQALGGHRASH 64
                               89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.24E-940110No hitNo description
PfamPF139121.3E-124166IPR007087Zinc finger, C2H2
SMARTSM003550.24264IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2424269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
PfamPF139126.3E-1087112IPR007087Zinc finger, C2H2
PROSITE profilePS501579.28688115IPR007087Zinc finger, C2H2
SMARTSM003550.588110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MMKREREIDS ITMANYLMLL SRGSDQFEAT YSSTITSNNR VFECKTCNRQ FSSFQALGGH  60
RASHKKPRLM GENIDGELLN TPPKPKTHEC SICGLEFAIG QALGGHMRRH RSSNLNGNNN  120
MHKSNHTMSY SSGGDGSSLD SSQKMKGRNK RVLVLDLDLN LTPFENDLEI MKIGRATTNL  180
IDFLH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1467500.0AC146750.32 Medicago truncatula clone mth2-16o6, complete sequence.
GenBankAC2454970.0AC245497.2 Medicago truncatula strain A17 clone mtrs-112g10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003621801.17e-97zinc finger protein ZAT11
TrEMBLA0A2K3P1Y41e-124A0A2K3P1Y4_TRIPR; Zinc finger protein ZAT11-like
STRINGAES780193e-96(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.14e-36C2H2 family protein