PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15730
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 283aa    MW: 32741.4 Da    PI: 8.8625
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15730genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.6e-071443130
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                               rg+WT  Ed ll ++++ +G g+W++ +++
  Tp57577_TGAC_v2_mRNA15730 14 RGPWTSREDALLTKYIQAHGEGQWRSLPKR 43
                               89***********************99886 PP
2Myb_DNA-binding52.31.3e-1689134148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg+ T++Ed+l+++ + +lG++ W++Ia +++ gRt++++k++w+++l
  Tp57577_TGAC_v2_mRNA15730  89 RGNITPDEDDLIIRMHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 134
                                7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.477983IPR017877Myb-like domain
SuperFamilySSF466891.33E-2511130IPR009057Homeodomain-like
SMARTSM007171.6E-71385IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-211590IPR009057Homeodomain-like
CDDcd001672.10E-51683No hitNo description
PROSITE profilePS5129426.15384138IPR017930Myb domain
SMARTSM007177.4E-1688136IPR001005SANT/Myb domain
PfamPF002495.5E-1589134IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2691139IPR009057Homeodomain-like
CDDcd001671.45E-1193134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGPWTSR EDALLTKYIQ AHGEGQWRSL PKRAVPYFFG LLCLFFSFES  60
NKYMNAGLLR CGKSCRLRWM NYLRPDIKRG NITPDEDDLI IRMHSLLGNR WSLIAGRLPG  120
RTDNEIKNYW NTHLGKKLKK QEPLEKKKKN KKMKKNDKNK VITKVPEDSD KKTLVYIPKA  180
IRIKKNLSSI IPITDNTINL DSNSITTSQE EEQKAETNEG DNDIFGLFFG EQYHEDLVNI  240
NSDDMEYQSG FLEKMYEEYL QLLKNEENHE NLLDSFAESL LA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-231213825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15730
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150388e-62AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450665.11e-145transcription repressor MYB6
TrEMBLA0A2K3LCI71e-173A0A2K3LCI7_TRIPR; MYB-related protein hv1-like
STRINGXP_007147330.11e-107(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-59myb domain protein 111