PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15682
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 516aa    MW: 57116.7 Da    PI: 5.0381
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15682genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-07178198526
                                --SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                +C+ f++ G C  Gd C +aHg
  Tp57577_TGAC_v2_mRNA15682 178 PCPEFRK-GSCTKGDACEYAHG 198
                                8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576127No hitNo description
CDDcd002041.61E-61158No hitNo description
SuperFamilySSF484032.05E-61262IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.5E-61460IPR020683Ankyrin repeat-containing domain
PfamPF000234.8E-51549IPR002110Ankyrin repeat
SMARTSM002480.00321547IPR002110Ankyrin repeat
PROSITE profilePS5008810.981550IPR002110Ankyrin repeat
PROSITE profilePS5029710.711550IPR020683Ankyrin repeat-containing domain
SMARTSM003560.0011173199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4177199IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-5178198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.047178200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4205237IPR000571Zinc finger, CCCH-type
SMARTSM0035636208231IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MPRIRQTQAP ACGSDGATAL HCAVFGCSAD SVEVIKLLLD ASADVSSVDA NGNRCIDLIV  60
LVSNSIFGSR KRILAILEGE DDVDYDGDDC LEEAGFQMGK LQQDSGSPQI EKKDYPIDPS  120
LPDIKNAIYS TDEFRMYTFK VKPCSRAYSH DWTECPFAHP GENAKRRDPR KYHYTCVPCP  180
EFRKGSCTKG DACEYAHGIF ESWLHPAQYR TRLCKDETEC TRRVCFFAHK PEELRPVYAS  240
TGSALPSPTS YSNSPSPSSM DSFTLNSPSA AMPPLNPSAV SSPLGGTMWP TQSYAAIPTL  300
QMPKTRLNNA HNARDNIELL ELENCLMRKL MIEEMTGLSS PSNRFSGVNL TNQEDIFLSP  360
RQSQTPMQVH QNLNQQMWGY PSDITNSNVI GSPQFKADPS TNSRYDAFSK RSNSFIERSS  420
RSSFNSELPS ATSVAASPSN FSGWGSPDGK LDWSVRGDEL NKMRKSYSLV FQNTNSFSTM  480
AASNVEVEDD QQCHNQDAVL SLPEQLYTDL EQMVM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15682
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590850.20.0zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ41e-139C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2K3PBB20.0A0A2K3PBB2_TRIPR; Zinc finger CCCH domain-containing protein 66-like
STRINGXP_004500271.10.0(Cicer arietinum)
STRINGAES611010.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-128C3H family protein