PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15614
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 369aa    MW: 41340 Da    PI: 6.5968
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15614genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA565.3e-18259293135
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Tp57577_TGAC_v2_mRNA15614 259 CLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRL 293
                                99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-16253303IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.308253289IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-15254316No hitNo description
Gene3DG3DSA:3.30.50.102.2E-14254290IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.60E-14258305No hitNo description
PROSITE patternPS003440259284IPR000679Zinc finger, GATA-type
PfamPF003207.7E-16259293IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MLFSLTTPNH KLFHTFFLQL LLPILSHFIF FFCFNFPNLT THNFNLPMEA QEFFHTNFSS  60
DNNATINNVN TAVSDHFVVE DLFDFSNDDD ATITDPAFDD SPPTNSNDSP PPETNTNSNF  120
FVDSSCQNSA DGPFSGELSV PYDDLAELEW LSKFAEESFS SEDLQKLQLI SGVKASNDTT  180
SKTQIESNPI LHPQVSVPAK ARSKRSRGPP CNWTSRLLVL SPTTTTTTTT SSQSDTIAPL  240
KKPSPRKRDT NDGGEGRKCL HCATDKTPQW RTGPLGPKTL CNACGVRYKS GRLVPEYRPA  300
ASPTFVLTKH SNSHRKVQEL RRQKEMMRAQ QHQLLQLQHH HNLMFDGASN GDDYLIHQHV  360
GHDFTHLM*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15614
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603626.20.0GATA transcription factor 9
SwissprotP697813e-87GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A396J2G60.0A0A396J2G6_MEDTR; GATA transcription factor
STRINGAES738771e-174(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-83GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]