PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15586
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 132aa    MW: 14735.3 Da    PI: 5.292
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15586genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-181364256
                        AP2  2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56
                               +y+GVr+++ +g++ AeIrdp++      r +lg+f+taeeAa+a++ a+ +l+g+
  Tp57577_TGAC_v2_mRNA15586 13 KYRGVRRRP-WGKFGAEIRDPTKpT---GRQWLGTFDTAEEAARAYDCAAIRLRGA 64
                               8********.**********97744...688**********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.7E-121363IPR001471AP2/ERF domain
SMARTSM003803.4E-311377IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-221373IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-301373IPR001471AP2/ERF domain
PROSITE profilePS5103223.9471371IPR001471AP2/ERF domain
CDDcd000181.19E-301372No hitNo description
PRINTSPR003677.1E-111425IPR001471AP2/ERF domain
PRINTSPR003677.1E-113753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MEDANKKGDE EVKYRGVRRR PWGKFGAEIR DPTKPTGRQW LGTFDTAEEA ARAYDCAAIR  60
LRGALAILNF PDEYYFHLSS LSSSSTSSST CGIASSSSTQ HKEVIEFEYL DNKVLEDLLA  120
PSKEENENKN H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-3181299129Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15586
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013463356.16e-69ethylene-responsive transcription factor ERF098
SwissprotQ9LTC56e-39ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2K3MMW34e-93A0A2K3MMW3_TRIPR; Ethylene-responsive transcription factor erf098-like protein
STRINGXP_004487930.15e-62(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.15e-22ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]