![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA15586 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 132aa MW: 14735.3 Da PI: 5.292 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 13 | 64 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g++ AeIrdp++ r +lg+f+taeeAa+a++ a+ +l+g+ Tp57577_TGAC_v2_mRNA15586 13 KYRGVRRRP-WGKFGAEIRDPTKpT---GRQWLGTFDTAEEAARAYDCAAIRLRGA 64 8********.**********97744...688**********************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.7E-12 | 13 | 63 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-31 | 13 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-22 | 13 | 73 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-30 | 13 | 73 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.947 | 13 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.19E-30 | 13 | 72 | No hit | No description |
PRINTS | PR00367 | 7.1E-11 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-11 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 132 aa Download sequence Send to blast |
MEDANKKGDE EVKYRGVRRR PWGKFGAEIR DPTKPTGRQW LGTFDTAEEA ARAYDCAAIR 60 LRGALAILNF PDEYYFHLSS LSSSSTSSST CGIASSSSTQ HKEVIEFEYL DNKVLEDLLA 120 PSKEENENKN H* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-31 | 8 | 129 | 9 | 129 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA15586 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013463356.1 | 6e-69 | ethylene-responsive transcription factor ERF098 | ||||
Swissprot | Q9LTC5 | 6e-39 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A2K3MMW3 | 4e-93 | A0A2K3MMW3_TRIPR; Ethylene-responsive transcription factor erf098-like protein | ||||
STRING | XP_004487930.1 | 5e-62 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23230.1 | 5e-22 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA15586 |
Publications ? help Back to Top | |||
---|---|---|---|
|