PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15424
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 745aa    MW: 86409 Da    PI: 8.8498
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15424genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.97.6e-1455140191
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                ++Y++Y+++vGF v+k +sk+  ++g  +  t+ Cs+  k  +++k+     ++++ t+t+Cka+l+     dg+  +++++le
  Tp57577_TGAC_v2_mRNA15424  55 EYYKRYGQSVGFGVTKLSSKNG-DDG-KKYFTLACSRGTKYVSKSKN---LLKPNPITKTQCKARLNGCICLDGTVTISSIVLE 133
                                69**************998887.444.6889******9999998888...999**************99999************ PP

                       FAR1  85 HnHelap 91 
                                HnH+l+p
  Tp57577_TGAC_v2_mRNA15424 134 HNHDLSP 140
                                ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.9E-1155140IPR004330FAR1 DNA binding domain
PfamPF105513.7E-40260354IPR018289MULE transposase domain
PROSITE profilePS509669.446545581IPR007527Zinc finger, SWIM-type
PfamPF044346.7E-5547577IPR007527Zinc finger, SWIM-type
SMARTSM005753.9E-4556583IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MCCDIVMEEV VVSSDGEEIN EENNKCDDSL ETNIVHEDEK PRVGMIFSSK DELTEYYKRY  60
GQSVGFGVTK LSSKNGDDGK KYFTLACSRG TKYVSKSKNL LKPNPITKTQ CKARLNGCIC  120
LDGTVTISSI VLEHNHDLSP TKARYFRSSK KLEPHLKRRL KLNDQAGINV SRNFRSLVVE  180
AGGYENLTFG EKDCRNYIDK VRRLRLGIGD ADAIQNYFVR MQKQNSQFYY VVDIDDNSRL  240
RNVFWADARC RAAYEYFGEV VTFDTTYLTN KYDMPFAPFV GVNHHGQSVL LGCALLSNED  300
TETFTWLFKT WLDCMHGRTP NAIITDQDKA MKKAIEVVFP KSRHRWCLWH IMKKVPEKLG  360
RHSDYESIKA LLHDAVYDSL SKSDFMEKWE KMIEDFELWD NEWLKDLFNE RNRRVPTYLR  420
DTFWAGMSTT QRSESMNSFF DGCVNSKTTL KQFVEQYDNA LKDKIEKENL ADFGSYNTLI  480
ACVSNFGFES QFQKAFTNAK FKEFQDEIGG MIYCHTVFER LEGLNSIYSV IESKKKFDKI  540
KDIIFKVSFN EKDFEIQCMC CLFQFKGILC RHILCVLKLT RKTESIPSYY IFSQWRKDIR  600
RRHTHIKCGF DHLVGNVELQ RVDKACAAFY EVASMVINND DDLLKMMNRI KEIKIEFTSK  660
ETSPDIIEED GSVPNQKTKI LHPKVARGKG RPPLKRKSSK VDQIVKKFAK KRIQIRSKKS  720
GKDQGQKEVI LRFVYILSNN FGHV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1690700RPPLKRKSSKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15424
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024626806.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A2Z6P9Q30.0A0A2Z6P9Q3_TRISU; Uncharacterized protein
STRINGXP_004496070.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-119FAR1 family protein