PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1533
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family EIL
Protein Properties Length: 236aa    MW: 27154.1 Da    PI: 6.6881
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1533genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3321.32.6e-98252341217
                               XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpve 85 
                               eelkkrmwkd++ll+++ke++ ++   +e++++ak     +e++rrkkmsraQD++LkYM k+m vc+a+GfvYgiipekgkpv+
  Tp57577_TGAC_v2_mRNA1533  25 EELKKRMWKDKILLQKMKEKQDKN---NEPELQAK-----QEASRRKKMSRAQDSVLKYMAKIMDVCKAKGFVYGIIPEKGKPVS 101
                               8**************999999974...68877776.....7******************************************** PP

                               XXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT CS
                      EIN3  86 gasdsLraWWkekvefdrngpaaisky....qaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplek 166
                               g+sdsLr+WWk++++fd  +p a++ky    ++++        + ++++s+ h l++lqD+tlgSLLsalmqhc ppqrrfple+
  Tp57577_TGAC_v2_mRNA1533 102 GSSDSLREWWKDQIRFDHSAPLAVAKYlpllEQDEQFN----TMMADPNSYIHLLQDLQDSTLGSLLSALMQHCVPPQRRFPLER 182
                               ***************************55543333332....2345799************************************ PP

                               --HHHH---S--HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHT CS
                      EIN3 167 gvepPWWPtGkelwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhm 217
                               g++pPWWPtG e wwge+g ++++qg+ppykkphdlkkawkvsvL++vikh+
  Tp57577_TGAC_v2_mRNA1533 183 GISPPWWPTGLENWWGEQGlTAQEQGPPPYKKPHDLKKAWKVSVLASVIKHV 234
                               *******************8899999*************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.7E-9925234No hitNo description
Gene3DG3DSA:1.10.3180.102.4E-46147234IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167686.93E-41149234IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVVISDETEP YGEEEETETE SVDYEELKKR MWKDKILLQK MKEKQDKNNE PELQAKQEAS  60
RRKKMSRAQD SVLKYMAKIM DVCKAKGFVY GIIPEKGKPV SGSSDSLREW WKDQIRFDHS  120
APLAVAKYLP LLEQDEQFNT MMADPNSYIH LLQDLQDSTL GSLLSALMQH CVPPQRRFPL  180
ERGISPPWWP TGLENWWGEQ GLTAQEQGPP PYKKPHDLKK AWKVSVLASV IKHVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A2e-40147234187Protein ETHYLENE INSENSITIVE 3
4zds_B2e-40147234187Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1533
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1253890.0AC125389.33 Medicago truncatula clone mth2-12a18, complete sequence.
GenBankCR9403090.0CR940309.6 M.truncatula DNA sequence from clone MTH2-10C20 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003601983.11e-149ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ51e-100EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLA0A2K3MTY41e-170A0A2K3MTY4_TRIPR; Ethylene insensitive 3-like 4 protein
STRINGAES722341e-148(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32234200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.12e-99EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]