PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15293
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 466aa    MW: 54369.6 Da    PI: 9.3625
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15293genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3543e-1722111699
                                ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                         B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                                ++s  l+   l++p++f+++hg++ +++  + l++++g++We++   + ++g ++++kGWkeF+    L+ g +v+F+++++ +
  Tp57577_TGAC_v2_mRNA15293  22 ITSTILQDEKLRFPNSFTRKHGSNMTNP--IFLKTPDGKKWEIYT-TKINDGDFWFQKGWKEFATHYSLDHGHMVLFEYEKNsQ 102
                                5788888999************998887..**************9.5778888**************************99744 PP

                                EE..EEEEE-S CS
                         B3  89 efelvvkvfrk 99 
                                   ++v++f k
  Tp57577_TGAC_v2_mRNA15293 103 Y--FRVHIFGK 111
                                4..59999977 PP
2B361.51.4e-19234322298
                                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                                f++ ++s++l s  l++p +fa ++ +k+e+   + l+ ++g++W  k+  + ++    +++GWk+Fv++n+Lk+gD++vF+l+
  Tp57577_TGAC_v2_mRNA15293 234 FTIVMKSSYLYSYSLYVPTQFAINYLKKEES--NILLKLLNGKTWYAKY--CFGK----IKSGWKNFVRDNKLKVGDVCVFELT 309
                                46667788888888********999656555..68888889********..4444....679********************** PP

                                SSSEE..EEEEE- CS
                         B3  86 grsefelvvkvfr 98 
                                +++  +l+v +fr
  Tp57577_TGAC_v2_mRNA15293 310 KSQALTLRVLIFR 322
                                99*********98 PP
3B361.11.8e-19369464199
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 
                                ffk+ + ++   ++rlv+p++f++e+  +ke+  t++      + W vkl    + ksg+  +++GW+eF ++n+Lk gD++vF
  Tp57577_TGAC_v2_mRNA15293 369 FFKINIMPNQRGHSRLVVPNSFIREYLDSKEQ--TVM-LKFGKKFWPVKLLCysNMKSGQ--FSRGWNEFWEENKLKGGDVCVF 447
                                88999999999999************666555..444.556889******5534444444..899******************* PP

                                EE-SSSEE..EEEEE-S CS
                         B3  83 kldgrsefelvvkvfrk 99 
                                +l++++++ l+v++fr 
  Tp57577_TGAC_v2_mRNA15293 448 ELIKTEDAVLHVHIFRG 464
                                ***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-2114113IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-2017112IPR015300DNA-binding pseudobarrel domain
CDDcd100172.40E-1617109No hitNo description
PROSITE profilePS5086314.31117112IPR003340B3 DNA binding domain
SMARTSM010195.8E-1418112IPR003340B3 DNA binding domain
PfamPF023623.4E-1522111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.7E-24226323IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-24227323IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-16232322No hitNo description
PROSITE profilePS5086314.015233324IPR003340B3 DNA binding domain
SMARTSM010196.1E-20234324IPR003340B3 DNA binding domain
PfamPF023628.7E-18234322IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.9E-22363463IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-20365463IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.8E-17369465IPR003340B3 DNA binding domain
CDDcd100171.03E-15369463No hitNo description
PROSITE profilePS5086314.043369465IPR003340B3 DNA binding domain
PfamPF023623.6E-18369464IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MTSNRKNKHT LPASTIRFFR IITSTILQDE KLRFPNSFTR KHGSNMTNPI FLKTPDGKKW  60
EIYTTKINDG DFWFQKGWKE FATHYSLDHG HMVLFEYEKN SQYFRVHIFG KSGLEIEYPF  120
HDDQHEENSF DQISDDDSIE ILDKSPSCKK TRPKSPISCS QPHKKLRSDT REDVGTSSKF  180
HDFPQNHDQS SDNTADGSVK CQKVEQEKEQ EELSSKINEA LNRARSFKSK NPCFTIVMKS  240
SYLYSYSLYV PTQFAINYLK KEESNILLKL LNGKTWYAKY CFGKIKSGWK NFVRDNKLKV  300
GDVCVFELTK SQALTLRVLI FRVDDEEPHF SSLPQDEKEP QRTSLRSKVK LETNEAQNAA  360
DNFTSKYPFF KINIMPNQRG HSRLVVPNSF IREYLDSKEQ TVMLKFGKKF WPVKLLCYSN  420
MKSGQFSRGW NEFWEENKLK GGDVCVFELI KTEDAVLHVH IFRGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1722046525144B3 domain-containing transcription factor VRN1
4i1k_B5e-1722046525144B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15293
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013466755.21e-180B3 domain-containing protein REM17
TrEMBLA0A2Z6PEH61e-180A0A2Z6PEH6_TRISU; Uncharacterized protein
STRINGAES628341e-135(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-30B3 family protein