PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA15248

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

M-type_MADS

Protein Properties

Length: 178aa MW: 20565.5 Da PI: 9.1159

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA15248	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	32.9	8.2e-11	9	50	2	43
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +i +++r+ f kR+ gilK +E+ +LC++e++ i++ ++ Tp57577_TGAC_v2_mRNA15248 9 FITHNTKRKAAFRKRKIGILKRLNEITTLCGIEACGILYDNN 50 78899******************************9998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	12.909	1	51	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.60E-19	1	84	No hit	No description
SMART	SM00432	3.4E-8	1	59	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.4E-19	3	94	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.6E-10	9	51	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MGNKVKLAFI THNTKRKAAF RKRKIGILKR LNEITTLCGI EACGILYDNN NPQPVVWPTD 60 SGAKSVLSRF ASLPESEQSN KKVNQEDFLW KRIEKDFEEL KKEREETRKN VMAIIINHYI 120 YTKEFNGNSM SKNDLNDMSC FIDENLKEIY RKMEGMKIES QEHDGNEAGV MNETKKQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA15248

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013456110.1	3e-68	agamous-like MADS-box protein AGL80
TrEMBL	A0A2K3JQQ0	1e-108	A0A2K3JQQ0_TRIPR; Agamous-like mads-box protein agl80-like (Fragment)
STRING	XP_004500460.1	8e-62	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16291	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	3e-25	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA15248