PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15208
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 305aa    MW: 35168.4 Da    PI: 9.7417
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15208genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.72.7e-15201011197
                                HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                         B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                                ++++rl +p+kf+++hg +   s  + ++ ++g +W+v+   +k  ++++++kGWk+F +   L++g  v+Fk+ +  s+f  +
  Tp57577_TGAC_v2_mRNA15208  20 TNLQRLKIPNKFTRRHGVS--LSNPVLINPPDGTKWKVYW--KKVNCEIWFEKGWKDFTQNYSLQQGYLVLFKYRKGtSNF--N 97 
                                456899**********866..666699999**********..9999***************************98655777..6 PP

                                EEEE CS
                         B3  94 vkvf 97 
                                v ++
  Tp57577_TGAC_v2_mRNA15208  98 VLIL 101
                                6665 PP
2B3469.2e-15212303196
                                EEEE-..-HHHHTT-EE--HHH..HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkf.aeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvF 82 
                                ff++l+++++l +g+l++p    ++eh+       + ++ +   rsW+vkl   +   ++  l++GW+ F+++ gLk gD++vF
  Tp57577_TGAC_v2_mRNA15208 212 FFTILIKPYHLVKGQLYVPSLKgVTEHK------EKYVMLQIGKRSWNVKLLRcNDEEKGRRLSAGWNLFASESGLKPGDVCVF 289
                                8999999*******9*999754244553......35899999*********76433333378********************** PP

                                EE-SSSEE..EEEE CS
                         B3  83 kldgrsefelvvkv 96 
                                +l+++++  ++v+v
  Tp57577_TGAC_v2_mRNA15208 290 ELINKNDLVFKVHV 303
                                ***88888777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.18310104IPR003340B3 DNA binding domain
CDDcd100172.67E-1412101No hitNo description
Gene3DG3DSA:2.40.330.103.1E-1812104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-1812111IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-1013104IPR003340B3 DNA binding domain
PfamPF023623.5E-1320100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-16208304IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-15208304IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.8E-10212302IPR003340B3 DNA binding domain
CDDcd100174.39E-13212304No hitNo description
PfamPF023624.0E-12212304IPR003340B3 DNA binding domain
PROSITE profilePS5086312.421212304IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MARTSPTQLP IRFFKIILQT NLQRLKIPNK FTRRHGVSLS NPVLINPPDG TKWKVYWKKV  60
NCEIWFEKGW KDFTQNYSLQ QGYLVLFKYR KGTSNFNVLI LGQNAMEIDY GSSSDTDDDE  120
NDNVGDSDDE SVKIIDGKNN SIDHSDDESV EILDEWLKRK KNKQMSPIGR SPRPHKKVRG  180
MYGFHFLCLC ETENITKRAQ EVAAKFISSN PFFTILIKPY HLVKGQLYVP SLKGVTEHKE  240
KYVMLQIGKR SWNVKLLRCN DEEKGRRLSA GWNLFASESG LKPGDVCVFE LINKNDLVFK  300
VHVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1319730433140B3 domain-containing transcription factor VRN1
4i1k_B2e-1319730433140B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15208
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600453.11e-125B3 domain-containing transcription factor VRN1
TrEMBLA0A2K3L3E51e-132A0A2K3L3E5_TRIPR; B3 domain-containing protein
STRINGAES707041e-125(Medicago truncatula)
STRINGAES858321e-125(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-18B3 family protein