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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Tp57577_TGAC_v2_mRNA15137 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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| Family |
C3H |
| Protein Properties |
Length: 357aa MW: 39789.2 Da PI: 7.5458 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp57577_TGAC_v2_mRNA15137 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 35.5 | 1.6e-11 | 34 | 60 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C+++ +tG C++G++C+F+H+p
Tp57577_TGAC_v2_mRNA15137 34 PGEPDCSYYIKTGLCRFGSTCRFNHPP 60
5789*********************97 PP
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| 2 | zf-CCCH | 40.3 | 5.4e-13 | 81 | 105 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C+++++tGtCk+G +CkF+H++
Tp57577_TGAC_v2_mRNA15137 81 QPECQYYMKTGTCKFGVTCKFHHPR 105
799********************96 PP
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| 3 | zf-CCCH | 39.2 | 1.2e-12 | 127 | 151 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C++++rtG+C++G++CkF+H++
Tp57577_TGAC_v2_mRNA15137 127 EAECSYYLRTGECQFGNTCKFHHPQ 151
789********************97 PP
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| 4 | zf-CCCH | 34.7 | 3e-11 | 217 | 243 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+++++C+f+++tG Ck+G+ C+F+H++
Tp57577_TGAC_v2_mRNA15137 217 PGQPECQFYMKTGDCKFGAGCRFHHPR 243
5789*********************96 PP
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| 5 | zf-CCCH | 36.1 | 1.1e-11 | 265 | 291 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C f++r+G+Ck+G++CkF+H++
Tp57577_TGAC_v2_mRNA15137 265 PGEPMCVFYSRYGICKFGPSCKFNHPM 291
57899********************95 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 14.849 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.8E-5 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.5E-8 | 35 | 60 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.23E-5 | 38 | 61 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.1E-4 | 39 | 59 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.408 | 78 | 106 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 6.3E-6 | 78 | 105 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.2E-10 | 81 | 105 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.31E-6 | 82 | 107 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.6E-5 | 84 | 106 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.802 | 124 | 152 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.8E-5 | 124 | 151 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.79E-6 | 126 | 152 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.5E-10 | 127 | 151 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.6E-4 | 130 | 150 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.216 | 216 | 244 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.1E-4 | 216 | 243 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.3E-8 | 218 | 243 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.97E-6 | 220 | 245 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 222 | 243 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.643 | 264 | 292 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.3E-6 | 264 | 291 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.33E-6 | 267 | 291 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 9.0E-8 | 269 | 291 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 269 | 289 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MEYHPIIPIS QGSMWMMKLR PSETMNSESY PQRPGEPDCS YYIKTGLCRF GSTCRFNHPP 60
NRKLAIVSAR TIGEFPERIG QPECQYYMKT GTCKFGVTCK FHHPRDQAEI SGRVALNTLG 120
YPLRPNEAEC SYYLRTGECQ FGNTCKFHHP QPSNMMLSLR SSPIYPTLHS PTSSYLPSSY 180
TPLIMPGWSA YSGQMGSMIS TPPASPLQRG NIFPERPGQP ECQFYMKTGD CKFGAGCRFH 240
HPRQRLLIPA SPDCLLSPMG LPLRPGEPMC VFYSRYGICK FGPSCKFNHP MGIFSYNISA 300
SPSVDATDRC LLGSSSATAT LLEESSSSKP TRLSISETRQ VPSDDDDDDD DIDEDR*
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