PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15107
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 478aa    MW: 50442.3 Da    PI: 8.455
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15107genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.7e-124469227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                               +++ C +++rtG+C yG+rC+F+H++
  Tp57577_TGAC_v2_mRNA15107 44 DEADCIYYLRTGFCGYGSRCRFNHPR 69
                               6799********************96 PP
2zf-CCCH33.76.3e-1190114327
                                S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                ++ C+++ rtG Ck+G++Ck++H++
  Tp57577_TGAC_v2_mRNA15107  90 QPVCQYYIRTGACKFGASCKYHHPR 114
                                689********************96 PP
3zf-CCCH37.73.4e-12136160327
                                S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                +++C+++a+tG+Ck+G++CkF+H++
  Tp57577_TGAC_v2_mRNA15107 136 EKECSYYAKTGQCKFGATCKFHHPQ 160
                                679********************97 PP
4zf-CCCH35.71.5e-11301326227
                                -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                ++ +C+++++tG+Ck+G++C+++H++
  Tp57577_TGAC_v2_mRNA15107 301 DQQECHHYMKTGECKFGSSCRYHHPQ 326
                                5679********************97 PP
5zf-CCCH30.56.3e-10347370427
                                ---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                 +C ++ + G+Ck+G+ CkF H++
  Tp57577_TGAC_v2_mRNA15107 347 QPCTHYTQRGICKFGSACKFDHPM 370
                                69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2954270IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-54269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-64470IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-104469IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-54869IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-587114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.23487115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-690115IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-890114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-592114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587133161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6135161IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5135160IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9136160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4139159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.042299327IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4299326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6301327IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9302326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4305326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474343371IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-6343370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6346373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-5347368IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7347370IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MERYGRANEG SNSDPTPEWT LAGVDTSHQG YGLVSGESYP QRPDEADCIY YLRTGFCGYG  60
SRCRFNHPRD RGAVIGAARI AGEYPERVGQ PVCQYYIRTG ACKFGASCKY HHPRQAAGTT  120
APVSLNYYGY PLRAGEKECS YYAKTGQCKF GATCKFHHPQ PAGVQMIPPS PVPQVSPLPM  180
PVPSPMYQTV QPPSGPSQQQ YGVLVARPPL LHGSFVQGPY GPMVVSPTMV PFSGWSPYQA  240
PAQSPLLPSS TPLSVGPTQI YGMTQVPSPT TAYTGHFQSS GSSTGPSGSS QKESSLPERP  300
DQQECHHYMK TGECKFGSSC RYHHPQDMGA PKVNFSPIGL PLRPGAQPCT HYTQRGICKF  360
GSACKFDHPM GSLSYSPSAS SLADMPVAPY PVGSSIGTLA PSSSSSELRP ELASGSSKES  420
ASSRMSSSMS TSTASVGLTL STVAPVSQSS TQPSAQSASS LATPSATTSS TVSHTSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15107
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743271e-154AC174327.15 Medicago truncatula chromosome 8 clone mth2-108e23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609623.20.0zinc finger CCCH domain-containing protein 34 isoform X2
SwissprotQ84W911e-147C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2K3N0490.0A0A2K3N049_TRIPR; Zinc finger CCCH domain-containing protein 58-like (Fragment)
STRINGAES918200.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-121C3H family protein