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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA14992 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | AP2 | ||||||||
Protein Properties | Length: 120aa MW: 13890.6 Da PI: 10.2377 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.6 | 1.5e-13 | 41 | 97 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g Tp57577_TGAC_v2_mRNA14992 41 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 97 57*******************99998898888888********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.29E-16 | 41 | 106 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-9 | 41 | 97 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.861 | 42 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-14 | 42 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-17 | 42 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-6 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-6 | 87 | 107 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MAKLSKQQTQ KNNNANSSVN NTKVKRTRRS VPRDSPIQRS SIYRGVTRHR WTGRYEAHLW 60 DKNCWNESQN KKGRQGAYDD EEAAAHAYDL AALKYWGPDT ILNFPVIILA IIFMEINYY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional activator involved in the activation of a subset of sugar-responsive genes and the control of carbon flow from sucrose import to oil accumulation in developing seeds. Binds to the GCC-box pathogenesis-related promoter element. Promotes sugar uptake and seed oil accumulation by glycolysis. Required for embryo development, seed germination and, indirectly, for seedling establishment. Negative regulator of the ABA-mediated germination inhibition. {ECO:0000250, ECO:0000269|PubMed:12084821, ECO:0000269|PubMed:15500472, ECO:0000269|PubMed:15753106, ECO:0000269|PubMed:16553903, ECO:0000269|PubMed:16632590, ECO:0000269|PubMed:9733529}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA14992 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transiantly in leaves by sucrose, but not by abscisic acid (ABA). {ECO:0000269|PubMed:15753106}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011020562.1 | 3e-56 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 | ||||
Refseq | XP_011020563.1 | 4e-56 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 | ||||
Swissprot | Q6X5Y6 | 3e-36 | WRI1_ARATH; Ethylene-responsive transcription factor WRI1 | ||||
TrEMBL | A0A2K2A424 | 2e-57 | A0A2K2A424_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s19360.1 | 3e-58 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1300 | 34 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 3e-32 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA14992 |