PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA14785 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | B3 | ||||||||
Protein Properties | Length: 160aa MW: 18576.2 Da PI: 8.402 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.5 | 3.1e-10 | 66 | 153 | 7 | 95 |
.-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 7 psdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkld 85 + + ++++l+l k+fa e+ +e +++l ++g s k+ k++ r + +++ W++Fv+ +g +gD++ F+++ Tp57577_TGAC_v2_mRNA14785 66 TDYEATKSQLTLNKEFA-EYvR-T-TEYDQVILCGPNGTSIATKI--IKYKVRwyytVKFGSQWRKFVSTKGFVSGDVLNFMFI 144 567788899********.6624.3.34448***************..444444344455779********************99 PP SSSEE..EEE CS B3 86 grsefelvvk 95 ++ e++ v++ Tp57577_TGAC_v2_mRNA14785 145 DK-EKNNVMR 153 85.3333444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 6.329 | 1 | 39 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.136 | 60 | 159 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.47E-10 | 63 | 152 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-10 | 63 | 152 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MITEGWEEMR KVFRIEGNQL VTTTYAGFKR FIVDVHPGEL NPNELSSLHS FKFEDNEPLS 60 FSVRPTDYEA TKSQLTLNKE FAEYVRTTEY DQVILCGPNG TSIATKIIKY KVRWYYTVKF 120 GSQWRKFVST KGFVSGDVLN FMFIDKEKNN VMRVVKLED* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA14785 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3LCF2 | 1e-103 | A0A2K3LCF2_TRIPR; ATP-dependent DNA helicase PIF1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14902 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA14785 |