PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14705
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family SBP
Protein Properties Length: 377aa    MW: 41858.2 Da    PI: 7.2174
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14705genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.56.1e-4198174278
                                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                C v+gC++dls++++yhrrhkvCe hsk+p+v++ gl+qrfCqqCsrfh+l++fDe+krsCr+rL++hn+rrrk+q+
  Tp57577_TGAC_v2_mRNA14705  98 CLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGLKQRFCQQCSRFHSLDQFDERKRSCRKRLDGHNRRRRKPQP 174
                                **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.0E-3295159IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.62495172IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-3896177IPR004333Transcription factor, SBP-box
PfamPF031102.1E-3098171IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDWNLKASSW DLGGIEEATL PNIETTMEEQ EEESNRFGKF SVDLKLGQVE NSVTDQSSSS  60
PLPLCKDAIV VSKMASPSSS GSSKRARAIN NTTLSVSCLV DGCNSDLSNC RDYHRRHKVC  120
ELHSKTPEVT IGGLKQRFCQ QCSRFHSLDQ FDERKRSCRK RLDGHNRRRR KPQPEPITRP  180
AGSFLSNYQG TQLLPFSSST TMVNSAWSSS GLITSCESGR LHIHNNQQNQ QLHVVDKQDH  240
FLGSTATTYG EGKQLQFLHN DNTNNNTPFL RTSSKMFCDS LTTSSVHESP RALSLLSSSQ  300
THTSHSMAQQ PHSMSLMQPP LGLSLHGNNN NNSFESMDRV LVPNGNESDH CSSLYNIGSD  360
GSQSNDAPQL YPYQWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-28981711184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153170RKRSCRKRLDGHNRRRRK
2153171RKRSCRKRLDGHNRRRRKP
3154171KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14705
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9542524e-98CT954252.6 M.truncatula DNA sequence from clone MTH2-60M21 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602795.10.0squamosa promoter-binding-like protein 13A
RefseqXP_024634059.10.0squamosa promoter-binding-like protein 13A
TrEMBLA0A2K3MZJ80.0A0A2K3MZJ8_TRIPR; Squamosa promoter-binding-like protein 13A-like
STRINGAES730460.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.17e-61SBP family protein