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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA1468 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | B3 | ||||||||
Protein Properties | Length: 154aa MW: 17333.3 Da PI: 8.5896 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.9 | 1.9e-13 | 42 | 135 | 1 | 83 |
EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+k+l+ sd +rl l k +++++ g++ ee+++ +++d +g+++++k++++ ++ yvl +GWk Fv+++ L ++ Tp57577_TGAC_v2_mRNA1468 42 FEKKLSASDLKVDlNRLFLDKGHVKKYslpllkeGEDLEEGIDAIVYDMQGKTFNMKFKFWSGK-FYVLNGGWKTFVQSHSLLAN 125 89999999976555******************997777799*****************999886.9****************998 PP -E....EEEE CS B3 78 Df....vvFk 83 ++F+ Tp57577_TGAC_v2_mRNA1468 126 QYhvtlCMFR 135 7522224455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-15 | 42 | 143 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-15 | 42 | 141 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0016 | 42 | 137 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.97E-13 | 42 | 140 | No hit | No description |
Pfam | PF02362 | 3.2E-9 | 42 | 129 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MVCSSPQIII PNVVMGNECN PLNIPTIPGV LSNNILGCCK PFEKKLSASD LKVDLNRLFL 60 DKGHVKKYSL PLLKEGEDLE EGIDAIVYDM QGKTFNMKFK FWSGKFYVLN GGWKTFVQSH 120 SLLANQYHVT LCMFRHSETG NLCFARLPYL LTR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA1468 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003598453.2 | 4e-49 | putative B3 domain-containing protein At4g03170 | ||||
TrEMBL | A0A2Z6M747 | 4e-87 | A0A2Z6M747_TRISU; Uncharacterized protein | ||||
STRING | XP_004498972.1 | 2e-48 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4148 | 19 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 2e-21 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA1468 |