PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA14571

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

ERF

Protein Properties

Length: 206aa MW: 23373.3 Da PI: 9.6155

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA14571	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.2	1e-18	58	108	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp++ng +r++lg++ t+eeA a+++a+ k++g Tp57577_TGAC_v2_mRNA14571 58 RYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYVTEEEAGLAYDKAAFKMRG 108 8******.*******9998..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.79E-30	57	118	No hit	No description
SMART	SM00380	1.0E-35	58	122	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.7E-31	58	117	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.907	58	116	IPR001471	AP2/ERF domain
Pfam	PF00847	2.6E-13	58	108	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.99E-22	58	117	IPR016177	DNA-binding domain
PRINTS	PR00367	1.6E-13	59	70	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-13	98	118	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MFSPTKDSEL TYLEHIQQYL LHDDSNILTS HQQIQSPNNN SNITASAREV HAPPTWKRYR 60 GVRRRPWGKF AAEIRDPKKN GARVWLGTYV TEEEAGLAYD KAAFKMRGRK AKLNFPHLIG 120 SDVFTEPKME VTLKRESPEP SSSSEDSCES SSQGSKRKRG MVNLLNKLAK NRSQAMVVEN 180 KMASQANDVE QWVNELNDFS LIWCS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-28	57	116	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	1e-28	57	121	4	68	ATERF1
3gcc_A	1e-28	57	121	4	68	ATERF1
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Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:10792818, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA14571

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:12090623, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013449424.1	1e-110	ethylene-responsive transcription factor 1
Swissprot	Q40479	1e-39	ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBL	A0A2K3LMS2	1e-151	A0A2K3LMS2_TRIPR; Ethylene-responsive transcription factor 2-like protein
STRING	XP_004493050.1	1e-103	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF512	33	157

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	3e-36	ethylene-responsive element binding factor 13

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA14571

Publications ? help Back to Top
Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells. Plant Cell Physiol., 2006. 47(4): p. 554-8 [PMID:16452120]