PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 141aa MW: 15615.5 Da PI: 6.4955

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA14564	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.9	4.2e-44	9	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+lrrkC++dC++apyfp e+p+kfanvhk+FGasnv+kll+++ +++red+++sl+yeAear++dPvyG+vg+i+ lq Tp57577_TGAC_v2_mRNA14564 9 PCAACKFLRRKCNQDCIFAPYFPPEEPHKFANVHKVFGASNVSKLLNEVLPHQREDTVNSLAYEAEARIKDPVYGCVGFISGLQ 92 7********************************************************************************* PP DUF260 85 qqleqlkaelallke 99 +ql l++el+++++ Tp57577_TGAC_v2_mRNA14564 93 RQLLGLQKELDATNA 107 ********99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.494	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-43	9	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MTSSYSNSPC AACKFLRRKC NQDCIFAPYF PPEEPHKFAN VHKVFGASNV SKLLNEVLPH 60 QREDTVNSLA YEAEARIKDP VYGCVGFISG LQRQLLGLQK ELDATNADLI QFTIQGSSSL 120 GLGHVDYSNG FYNYPSNFEQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-58	2	113	4	115	LOB family transfactor Ramosa2.1
5ly0_B	7e-58	2	113	4	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA14564

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC174342	1e-134	AC174342.16 Medicago truncatula chromosome 6 clone mth2-166e17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003618147.1	2e-85	LOB domain-containing protein 25
Refseq	XP_024641260.1	2e-85	LOB domain-containing protein 25
Refseq	XP_024641261.1	2e-85	LOB domain-containing protein 25
Refseq	XP_024641262.1	2e-85	LOB domain-containing protein 25
Swissprot	Q8L8Q3	2e-63	LBD25_ARATH; LOB domain-containing protein 25
Swissprot	Q9FML4	3e-63	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A2K3KYH0	1e-100	A0A2K3KYH0_TRIPR; LOB domain-containing protein 25-like
STRING	AES74365	7e-85	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1091	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	8e-66	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA14564

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]