PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA14379

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 131aa MW: 15070.8 Da PI: 10.2208

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA14379	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29	1.9e-09	46	90	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 e+Er+RR+++ s++ Lr+l+P + ++Ka+i e A+ Y k+Lq Tp57577_TGAC_v2_mRNA14379 46 LEIERKRREKLGSRLLVLRSLVPII-----TSMNKASIIEDAITYTKMLQ 90 589*******************6.....58*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.027	40	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-12	45	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.5E-7	46	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.7E-9	46	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.0E-11	47	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.54E-8	47	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MEQESDHRLS MSMEDLGFNT SYNMKGKLGE KHYDDVGPKV FISKNLEIER KRREKLGSRL 60 LVLRSLVPII TSMNKASIIE DAITYTKMLQ KEXXXXXXXX XXXXXXXXXX XQSKKHVNLL 120 LLGKRSIYLG *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	53	ERKRRE
2	49	54	RKRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA14379

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013457137.1	3e-31	transcription factor DYT1
TrEMBL	A0A2K3N2Z0	4e-38	A0A2K3N2Z0_TRIPR; Transcription factor DYSFUNCTIONAL TAPETUM 1
STRING	XP_004504967.1	2e-28	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5510	29	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21330.1	4e-11	bHLH family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA14379