![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA1430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 244aa MW: 28172 Da PI: 10.2074 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.4 | 3.2e-10 | 134 | 216 | 1 | 76 |
EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 f+k+l++sd + +rl l k ++e++ +++ ee+++++++d +g+ +++k++++ ++ yvl +GWk F k++ + Tp57577_TGAC_v2_mRNA1430 134 FEKKLSTSDLRVNlNRLFLEKGHVEKYflpllkeSEDLEEGIDVVVYDMQGQMFNMKFKFWSGK-FYVLNGGWKIFFKSHSFLA 216 899**999987666****************999844556899****************999886.9*************98764 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.55E-12 | 134 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.63E-10 | 134 | 242 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 7.5E-14 | 134 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 244 aa Download sequence Send to blast |
MKETKSMHNL SFKSHNIMKR KRSNTPKIKR RVCGLHLMDF TSDEYEAADG LVLLQTLFQK 60 KNIVRRLKIT FGGKRICGKT YDNNVHSVVS KNKVCSSPQI IIPNVVMGNE CNPLNIPTIP 120 GVLSNNILGC CKPFEKKLST SDLRVNLNRL FLEKGHVEKY FLPLLKESED LEEGIDVVVY 180 DMQGQMFNMK FKFWSGKFYV LNGGWKIFFK SHSFLANQDH IKVWMFRHFE TDNLCFALSV 240 RRV* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA1430 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3M041 | 1e-133 | A0A2K3M041_TRIPR; Ap2 b3-like transcriptional factor family protein | ||||
STRING | XP_004498972.1 | 2e-60 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4148 | 19 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G03170.1 | 4e-22 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA1430 |