 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Tp57577_TGAC_v2_mRNA14231 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
| Family |
Whirly |
| Protein Properties |
Length: 264aa MW: 29641 Da PI: 9.3581 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp57577_TGAC_v2_mRNA14231 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 172.2 | 1.2e-53 | 83 | 222 | 1 | 138 |
Whirly 1 svyktkaalkvkavrptfealds..gnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaa 82
s+yk+ka l+v ++ p+f++l+s g++k++++G ++le+a+a++ +ydW++kq+f+ls+ e+++l++l ++esceffhd +
Tp57577_TGAC_v2_mRNA14231 83 SIYKAKAVLTVSPRPPQFTTLNSgsGAFKISKEGCVMLEFAPAAGAYQYDWNRKQVFSLSVDEIGNLISLRPRESCEFFHDLFI 166
79*****************998622689******************************************************** PP
Whirly 83 kgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
++s+eGkvrk lkv+Pl d sG+++n+sv+n+l + ne++ +Pv+kaefav++sl+
Tp57577_TGAC_v2_mRNA14231 167 GKSDEGKVRKFLKVKPLLDRSGHMFNISVENKLENINENILIPVTKAEFAVFNSLF 222
****************************************************9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 264 aa
Download sequence Send
to blast |
MKILQAQSYT TTTNPFSIPT HSFITPKLSI PVRHVGPTFS STLQQFSITC RRPYPFQPKQ 60
SPPPPSPSSS VGELPAKIYV GHSIYKAKAV LTVSPRPPQF TTLNSGSGAF KISKEGCVML 120
EFAPAAGAYQ YDWNRKQVFS LSVDEIGNLI SLRPRESCEF FHDLFIGKSD EGKVRKFLKV 180
KPLLDRSGHM FNISVENKLE NINENILIPV TKAEFAVFNS LFDFIMPSLL GWNVFTNTIN 240
PEVNNTNQGI EEDFEWNKFN RIM*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4koo_A | 2e-78 | 74 | 240 | 5 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
| 4koo_B | 2e-78 | 74 | 240 | 5 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
| 4koo_C | 2e-78 | 74 | 240 | 5 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
| 4koo_D | 2e-78 | 74 | 240 | 5 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AY183085 | 8e-68 | AY183085.1 Trifolium repens clone ca297 microsatellite sequence. |
| Publications
? help Back to Top |
- Lepage É,Zampini É,Brisson N
Plastid genome instability leads to reactive oxygen species production and plastid-to-nucleus retrograde signaling in Arabidopsis.
Plant Physiol., 2013. 163(2): p. 867-81
[PMID:23969600] - Carella P,Wilson DC,Cameron RK
Some things get better with age: differences in salicylic acid accumulation and defense signaling in young and mature Arabidopsis.
Front Plant Sci, 2014. 5: p. 775
[PMID:25620972] - Zampini É,Lepage É,Tremblay-Belzile S,Truche S,Brisson N
Organelle DNA rearrangement mapping reveals U-turn-like inversions as a major source of genomic instability in Arabidopsis and humans.
Genome Res., 2015. 25(5): p. 645-54
[PMID:25800675] - Ren Y,Li Y,Jiang Y,Wu B,Miao Y
Phosphorylation of WHIRLY1 by CIPK14 Shifts Its Localization and Dual Functions in Arabidopsis.
Mol Plant, 2017. 10(5): p. 749-763
[PMID:28412544] - Karpinska B,Alomrani SO,Foyer CH
Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
[PMID:28808105] - Huang D,Lin W,Deng B,Ren Y,Miao Y
Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
Int J Mol Sci, 2018.
[PMID:29112140] - Guan Z,Wang W,Yu X,Lin W,Miao Y
Comparative Proteomic Analysis of Coregulation of CIPK14 and WHIRLY1/3 Mediated Pale Yellowing of Leaves in Arabidopsis.
Int J Mol Sci, 2018.
[PMID:30065159]
|
