PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14168
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HSF
Protein Properties Length: 714aa    MW: 80821.3 Da    PI: 7.2917
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14168genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind75.49.9e-24158325102
                                SSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  25 gnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                                 nsf+vld+ +f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll++i rkk+
  Tp57577_TGAC_v2_mRNA14168  15 XNSFIVLDPLQFSHSLLPVFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEYFLRGQKQLLKNIVRKKH 83 
                                589***************************************999.........*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.2E-27181IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-241581IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.3E-201581IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.31E-211681IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.0E-93042IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403155IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-94355IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF105512.9E-14311364IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MPQKPSXXXX XXXXXNSFIV LDPLQFSHSL LPVFFKHNNF SSFVRQLNTY GFRKVDPDRW  60
EFANEYFLRG QKQLLKNIVR KKHVGGVGNG RNNNNYFNEV KFEDLEEDEV MMKEILKLKE  120
EQRILDEELQ GMNKRLETTE KRPQQMMAFL CNVVEDPQIL SRILNEREKQ IIVETKKRRF  180
ISPPETAAMT VATTSTSSSS SGMGIASTVK MEFDEDELTV ANNMTSSSPE MGFEIDYFHR  240
EPPQGLTPAG DXXXXXXXXX XXXXXVDGGV SGAGDGRVHI DIISRRWYVT VFEIEHNHEL  300
LNGTMCGFSP AETYVWLLEQ FLTTMNGKHL LSVITDEDLA MRDAIRRVFP NSRHRLCAWH  360
LLRNASSNIG IPECVSHLKR CMLVFTPIFM VEKFGLQDNS WVKDMYEKRK MWVTAHIKGC  420
FFAGIRTTSR CVALHNHIGQ FLHSRISMTD FVQQFHKCLT FFRFREIDFQ SNYGSSPPYT  480
ERVEMSTGFP AIVQMCKVVV ELVYNDLEEY NHIVNILGGE ISSLKIKRNY KNGELSLGLQ  540
TGSAEEDILN PDIVRTKGCG AMPNGTLSNQ RRQRSCGVCR VIGHNMHSCP HTNTNSASGN  600
TQSPVTKARH YIDETYEFLG QSVSETLYIN YNNFYVVLYT CGVSPYESWS TCASSSSPPP  660
PPSPSLTSSL PPPSPLLPLG GLKPPQSPFD SLLSSSTSTI SSFVSTIVNK KLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-16168153129Heat shock factor protein 1
5d5v_B6e-16168153129Heat shock factor protein 1
5d5v_D6e-16168153129Heat shock factor protein 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14168
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.19e-58heat shock transcription factor C1