PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14155
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 562aa    MW: 62830.5 Da    PI: 8.7014
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14155genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.42.2e-1719105498
                                E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                         B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                v+  s +++s+ l++p  f+ +++g  +++  ++l+ +sg+ W+v+l    +++  ++  GW+ Fv +++L+ gD +vF+++g+
  Tp57577_TGAC_v2_mRNA14155  19 VF--SPSSTSQSLRIPDGFVHQMEGT-TCG-LVSLTGPSGNNWQVRL--VEQDNYLFFHHGWSTFVGDHHLEYGDLLVFRYEGH 96 
                                55..45555666********888766.455.9***************..999999**************************987 PP

                                SEE..EEEEE- CS
                         B3  88 sefelvvkvfr 98 
                                  f  +v+vf 
  Tp57577_TGAC_v2_mRNA14155  97 LHF--TVQVFG 105
                                666..888876 PP
2B352.21.1e-16221312195
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                                f+k++++ +v+ s  l +p +f ++h   ++++++++l +++g+ W+v+    ++   +++l +GW  Fv+ n +k+gD+++F+
  Tp57577_TGAC_v2_mRNA14155 221 FVKIMKTFNVSGSYTLNIPYQFSTSHL--PNCKIKIILHNLKGEHWTVNSVPtTRVHTSHTLCGGWMAFVRGNSIKVGDVCIFE 302
                                8999*******************9996..45999***************954566666799*********************** PP

                                E-SSSEE..EEE CS
                         B3  84 ldgrsefelvvk 95 
                                l+++   el+v+
  Tp57577_TGAC_v2_mRNA14155 303 LIHE--YELRVR 312
                                9985..334555 PP
3B348.51.6e-15449533186
                                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvv 81 
                                f+k++++ +v+ s  l +p +f ++h        ++++tl++++g+ W+v+   + k+++ +++ +GW  Fv++n+++ gD+++
  Tp57577_TGAC_v2_mRNA14155 449 FVKIMKKFNVSGSYTLKIPYQFSAAHlpA----YKTEVTLRNSRGECWTVNSVPDAKGRTiHTFCGGWMAFVRDNDINFGDTCI 528
                                89999999***************999533....4468***************777777667*********************** PP

                                EEE-S CS
                         B3  82 Fkldg 86 
                                F++++
  Tp57577_TGAC_v2_mRNA14155 529 FEMVS 533
                                **764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-2210109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-2212109IPR015300DNA-binding pseudobarrel domain
CDDcd100173.50E-1614104No hitNo description
PROSITE profilePS5086313.8614107IPR003340B3 DNA binding domain
SMARTSM010191.2E-1316107IPR003340B3 DNA binding domain
PfamPF023621.2E-1419104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-21212314IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-22214314IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-18219313No hitNo description
SMARTSM010191.1E-10221317IPR003340B3 DNA binding domain
PfamPF023621.6E-13221312IPR003340B3 DNA binding domain
PROSITE profilePS5086312.999221317IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.9E-22441542IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-23442543IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-18447540No hitNo description
PROSITE profilePS5086312.689449545IPR003340B3 DNA binding domain
SMARTSM010195.2E-10449545IPR003340B3 DNA binding domain
PfamPF023627.1E-13449533IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MACECKGKLN VRKPQFYQVF SPSSTSQSLR IPDGFVHQME GTTCGLVSLT GPSGNNWQVR  60
LVEQDNYLFF HHGWSTFVGD HHLEYGDLLV FRYEGHLHFT VQVFGENACE KEAAFHTECN  120
LNSINFDNIE GQKTDAKETS SLDVVSDQQG IAGRDLSKYE VVKPISMIRE REETYKECST  180
SAVPVPFHTV NSNEDQASLS MLSAHDEKKI AQSFTSSFPY FVKIMKTFNV SGSYTLNIPY  240
QFSTSHLPNC KIKIILHNLK GEHWTVNSVP TTRVHTSHTL CGGWMAFVRG NSIKVGDVCI  300
FELIHEYELR VRIAEVGKDG LDSQVGKLAY SMLTARHDVA CHKTSRYMSK SPKVSSKCRS  360
KVDQSDKLSK IGQDAVLSID LKKSGRASNT SKKMGLSPKS KAVHKKLAVP RKHRVEDELS  420
SQAKAGLRML FALDEQRVAE AFSSPFPNFV KIMKKFNVSG SYTLKIPYQF SAAHLPAYKT  480
EVTLRNSRGE CWTVNSVPDA KGRTIHTFCG GWMAFVRDND INFGDTCIFE MVSHYVMHVY  540
ISGVGKEGLD NQNGHVKVIA N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14155
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1484041e-174AC148404.7 Medicago truncatula clone mth2-28d4, complete sequence.
GenBankAC2024881e-174AC202488.8 Medicago truncatula clone mth2-180n9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499102.10.0B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A2K3PKS90.0A0A2K3PKS9_TRIPR; B3 domain-containing protein
STRINGXP_004499102.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-22B3 family protein