PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14131
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 529aa    MW: 59066.2 Da    PI: 9.9505
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14131genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.19.1e-20381181198
                                HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                         B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                                ++++ l lpk+f ++ +  k+ +   tl+ +sg +W++ l  + k++++++t+GWk+F k++ Lke Df+vFk++g+s f   v
  Tp57577_TGAC_v2_mRNA14131  38 FEQH-LALPKTFSNNVK--KKLPENATLKGPSGVVWNIGL--KTKDDTVYFTNGWKQFLKDHSLKESDFLVFKYNGESHF--EV 114
                                4444.99*****85554..458889***************..*********************************99999..88 PP

                                EEE- CS
                         B3  95 kvfr 98 
                                 +f+
  Tp57577_TGAC_v2_mRNA14131 115 LIFD 118
                                8877 PP
2B342.51.1e-13352435995
                                HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                         B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                                +++++  + +p kf + h    ++++++tl +++g++W+v+    +k  +++++ +GW +Fv+ n++k gD+++F+l+g+ e  
  Tp57577_TGAC_v2_mRNA14131 352 YSGELFHFNVPSKFSKVHLP--NTKIQITLHNLKGEQWTVNAVPtTKLHSSHTMCGGWLDFVRGNDIKLGDVCIFELIGKCEL- 432
                                5566777899****988843..35678**************965566667799999**********************96544. PP

                                .EEE CS
                         B3  92 lvvk 95 
                                 +v+
  Tp57577_TGAC_v2_mRNA14131 433 -RVR 435
                                .555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.84E-2226118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.84827120IPR003340B3 DNA binding domain
CDDcd100172.24E-1829118No hitNo description
Gene3DG3DSA:2.40.330.104.4E-2330118IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-1730120IPR003340B3 DNA binding domain
PfamPF023622.5E-1639118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-19302325IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.984344440IPR003340B3 DNA binding domain
SMARTSM010192.8E-9344440IPR003340B3 DNA binding domain
PfamPF023626.7E-11353436IPR003340B3 DNA binding domain
CDDcd100173.12E-15356436No hitNo description
SuperFamilySSF1019361.24E-18357437IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-19360437IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MVGVGGTQIF GGSKSWQEDI YWTHFQFIHF TQFLRTDFEQ HLALPKTFSN NVKKKLPENA  60
TLKGPSGVVW NIGLKTKDDT VYFTNGWKQF LKDHSLKESD FLVFKYNGES HFEVLIFDGE  120
SLCEKASSYF VGKCGHPQTE QGDNKAKETN NSLGEINTAS NGGVECGSPE KFRRVNSIRT  180
PLPVPFETTN GETFNAGVES ASPEKLMADA LTKTTTIQFP FQPTGKRTKK PVNEVTPTPV  240
QTKKRGRRPF KAAHSCDLVA CNKEHSETSN LNRSGKEDDH YIPSGGASLS RSSIFHEKKI  300
AQSFTSTFPY FVKIMKSFNV GGSRXXXXXX XXXXXXXXXX XXXIIQCRRF TYSGELFHFN  360
VPSKFSKVHL PNTKIQITLH NLKGEQWTVN AVPTTKLHSS HTMCGGWLDF VRGNDIKLGD  420
VCIFELIGKC ELRVRIAEVG KDGLEDSQIG KQASSTLGAR HDVVRNKTSS SRYKPKSSKF  480
SSKYRKKVVA SDKKLSKIGQ EAVLSIELKK SDVGKEGLDN QNGHMNEP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14131
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589270.20.0uncharacterized protein LOC11411561 isoform X1
RefseqXP_024631135.10.0uncharacterized protein LOC11411561 isoform X1
RefseqXP_024631136.10.0uncharacterized protein LOC11411561 isoform X1
RefseqXP_024631138.10.0uncharacterized protein LOC11411561 isoform X3
TrEMBLG7I4K40.0G7I4K4_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGAES595301e-175(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-47B3 family protein