![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA1413 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 249aa MW: 29259.9 Da PI: 8.878 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.2 | 9.1e-11 | 137 | 222 | 1 | 77 |
EEEE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 f+k+l++sd +rl + k+++e++ +++ e ++ ++ +d +gr+++++++++ k+ ++ ++GWk+F k++ L++ Tp57577_TGAC_v2_mRNA1413 137 FEKKLSNSDLRVDyNRLFMTKSHVEDYflpflrecEENIEDGIHVVAYDMQGRTFNMTFKIWTKKFYVLTGSGWKNFFKQHSLRA 221 8999999997665699*****************997777899*****************999998666666************97 PP T CS B3 77 g 77 + Tp57577_TGAC_v2_mRNA1413 222 N 222 6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-13 | 137 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-14 | 137 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.71E-10 | 137 | 247 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence Send to blast |
MNRSSKMKGK VYDFYPMDFN RDEHEVADIL LHMPMLHIVI EKRKNVKITL GGKRISKIRE 60 EIDNNNNVHA MLQNNIPDVV MENNVVHAMP QINIPDVRAM PQINILDVVM ENVNNTLDIP 120 MIPGVPNNNI FQCCKPFEKK LSNSDLRVDY NRLFMTKSHV EDYFLPFLRE CEENIEDGIH 180 VVAYDMQGRT FNMTFKIWTK KFYVLTGSGW KNFFKQHSLR ANQDHVKVWM FRHSQTNKIC 240 FALSIRRE* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA1413 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003598455.1 | 7e-54 | putative B3 domain-containing protein At4g03170 | ||||
TrEMBL | A0A2K3LR19 | 0.0 | A0A2K3LR19_TRIPR; Ap2 b3-like transcriptional factor family protein | ||||
STRING | AES68698 | 6e-53 | (Medicago truncatula) | ||||
STRING | AES68706 | 3e-53 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4148 | 19 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G03170.1 | 6e-21 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA1413 |