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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA13851 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 208aa MW: 23424 Da PI: 8.6677 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.4 | 1.5e-17 | 118 | 168 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdps k r++lg+f + +Aaka++ a+ +++g Tp57577_TGAC_v2_mRNA13851 118 HYRGVRRRP-WGKFAAEIRDPSR--KGSRVWLGTFNNEIDAAKAYDCAAFRMRG 168 8********.**********854..34**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.1E-31 | 117 | 177 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.24E-28 | 117 | 176 | No hit | No description |
Pfam | PF00847 | 5.5E-12 | 118 | 168 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-33 | 118 | 182 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.617 | 118 | 176 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 118 | 178 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.5E-13 | 119 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-13 | 158 | 178 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:1902074 | Biological Process | response to salt | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MTTSEETSSL KLLSQHLLED ISDSFFTNLS SVKLEYTSSS SPSPSSEIDL DSYFSEQNSF 60 LEILGFEADT KFIDFSSHDK VQNMKEERPF EETHNKNSNS AEPIVLEKKE QRCYGGKHYR 120 GVRRRPWGKF AAEIRDPSRK GSRVWLGTFN NEIDAAKAYD CAAFRMRGQK AILNFPLEAG 180 KANPKPNNSV SGRKKRIHQR DAATSSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-30 | 116 | 177 | 3 | 64 | ATERF1 |
3gcc_A | 4e-30 | 116 | 177 | 3 | 64 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA13851 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003591657.1 | 1e-112 | ethylene-responsive transcription factor ERF106 | ||||
TrEMBL | A0A2K3MX51 | 1e-150 | A0A2K3MX51_TRIPR; Ap2/erf domain-containing transcription factor | ||||
STRING | AES61908 | 1e-111 | (Medicago truncatula) | ||||
STRING | AES84238 | 1e-111 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 2e-38 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA13851 |