PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13619
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 463aa    MW: 51910.4 Da    PI: 9.1038
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13619genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-057193123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               + C++C+k F r  nL+ H r H
  Tp57577_TGAC_v2_mRNA13619 71 FICEICNKGFQRDQNLQLHKRGH 93
                               89******************988 PP
2zf-C2H212.60.0004148170123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                +kC++C+k++  +s+ k H + +
  Tp57577_TGAC_v2_mRNA13619 148 WKCEKCSKRYAVQSDWKAHSKIC 170
                                58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.38E-77093No hitNo description
Gene3DG3DSA:3.30.160.606.9E-67093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121713.0E-57193IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0227193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8037193IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355110113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-4136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.38E-7143168No hitNo description
SMARTSM00355130148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MMKGLSVDEN MSNLTSVSSE ISPSNSATKN GKASTNLEPQ TKRKRNLPGH PDPEAEVIAL  60
SPQTLLATNR FICEICNKGF QRDQNLQLHK RGHNLPWKLK KRNSKEIIRK KVYVCPESTC  120
VHHEPSRALG DLTGIKKHFF RKHGEKKWKC EKCSKRYAVQ SDWKAHSKIC GTKEYKCDCG  180
TLFSRRDSFI THRAFCDVLS QESAALNPLF SSHSFQLPSL KKEQDFNIIR PEIIPSWFPS  240
SSTPQQLLPT HFSHYHQNPN PTNLFHSNFN SNNIITTSSP HMSATALLQK ASQIGVTVSK  300
TEPCIPHLMQ THVPYMTSRD HEIVNSTAGF SHYLASYGNK AVTNTEESSL LLHDVIFGNE  360
NSSSHSSQFE SVNAAMSMRG MFDPQIDNNN FQGQQYSNFG KSNIIKSGGA IANDDEMTRD  420
FLSLGAFSQR DDLLFSISGI DDPLGTLSYG KQNQNQTPWR RG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34144209368Zinc finger protein JACKDAW
5b3h_F3e-34144209368Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197110KLKKRNSKEIIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13619
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1529201e-168AC152920.17 Medicago truncatula clone mth2-101o15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465889.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-116IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A2K3KZN30.0A0A2K3KZN3_TRIPR; Zinc finger protein NUTCRACKER-like (Fragment)
STRINGXP_004498879.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-117indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]