PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13566
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 351aa    MW: 39739.1 Da    PI: 7.5494
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13566genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-171462148
                               TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                               +g+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl
  Tp57577_TGAC_v2_mRNA13566 14 KGPWSPEEDTKLKSYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                               79*********************************************97 PP
2Myb_DNA-binding37.55.4e-1269111246
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA13566  69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                                569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.036962IPR017930Myb domain
SuperFamilySSF466891.43E-2611109IPR009057Homeodomain-like
SMARTSM007178.2E-131364IPR001005SANT/Myb domain
PfamPF002495.3E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-241569IPR009057Homeodomain-like
CDDcd001671.72E-91662No hitNo description
PROSITE profilePS5129421.57963117IPR017930Myb domain
SMARTSM007174.8E-1167115IPR001005SANT/Myb domain
PfamPF002491.3E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2370117IPR009057Homeodomain-like
CDDcd001677.85E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDTKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNLKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
HRKEQQQQAR NRGNNGVMIK QECNMNRSDQ YSLSNLVQEQ SFLPHVMQNM LSTPPPPPQL  180
QPQPQPPMLS SYTNQGFNDQ DSIRKLLIKL GGRFSGDYHP NPSTNNNFDG LNLPFSNATS  240
SSHEQVYDQE HIGSSTCVNS SNGNNNNNQV QFVQNGQYFD SVQEEQGKFI QEIDHMVSTN  300
NFPQRFDGLE FFFGEEDMSI NNKIEGSSTN WGDEATTSSY HHPLDSKYQG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13566
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465937.10.0transcription factor RAX3 isoform X2
SwissprotQ9M2Y94e-84RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A2K3MXE40.0A0A2K3MXE4_TRIPR; Transcription factor RAX3-like protein
STRINGXP_004498935.11e-176(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-79myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]