PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13436
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 398aa    MW: 44797 Da    PI: 8.1466
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13436genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.4e-14167215148
                                TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                                rg+W+++Ed +l+++ + +G+  +W + +++ g++R++k+c++rw++yl
  Tp57577_TGAC_v2_mRNA13436 167 RGPWSPDEDAKLKNYLAIHGTVgNWIALPKKAGLKRCGKSCRLRWLNYL 215
                                89******************879************************97 PP
2Myb_DNA-binding46.48.8e-15222264246
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                g +T+eEd ++  + +q+G++ W++Ia++++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA13436 222 GGFTEEEDTIICTLYAQMGSR-WSAIASKLP-GRTDNDVKNYWNT 264
                                569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.6162215IPR017930Myb domain
SuperFamilySSF466897.26E-26165262IPR009057Homeodomain-like
SMARTSM007174.0E-11166217IPR001005SANT/Myb domain
PfamPF002494.9E-13167215IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-23168222IPR009057Homeodomain-like
CDDcd001671.15E-8169215No hitNo description
PROSITE profilePS5129420.63216270IPR017930Myb domain
SMARTSM007172.9E-14220268IPR001005SANT/Myb domain
PfamPF002495.9E-13222264IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-24223269IPR009057Homeodomain-like
CDDcd001675.72E-11224266No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MREVLYINNV VFVLAKFFYF IHKVFFAGRL VGGEKGHYSV PHSVLLSTLP DNIYLHKLDQ  60
DIGRIRQKKN FDEEVVYINN VVFVLAKFFY FIHKVFFAGR LVGGEKGHYS VPHSVLLSTL  120
PDNIYLHKLD QDIGRIRQKS FLRERESVRE RVAMGRAPCC DKDKVKRGPW SPDEDAKLKN  180
YLAIHGTVGN WIALPKKAGL KRCGKSCRLR WLNYLRPDIK HGGFTEEEDT IICTLYAQMG  240
SRWSAIASKL PGRTDNDVKN YWNTKLKKNF MAGKVGLKSL TENDNTIPST PSLTQSCNTF  300
DAGYGLNNNE KNIGFDQIHD VGVSEIGASN NNIDMNPMVS MSLDNSSIGV NNNCDQAGDD  360
ESLEPLMDFG FGVGSDFASS CCFPEWVDFS YADIKTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-241672687106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13436
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1451561e-61AC145156.61 Medicago truncatula clone mth2-7h6, complete sequence.
GenBankAF5201611e-61AF520161.1 Zenia insignis maturase (matR) gene, partial cds; mitochondrial gene for mitochondrial product.
GenBankAF5201681e-61AF520168.1 Albizia schimperiana maturase (matR) gene, partial cds; mitochondrial gene for mitochondrial product.
GenBankAF5201771e-61AF520177.1 Glycine soja maturase (matR) gene, partial cds; mitochondrial gene for mitochondrial product.
GenBankAP0125991e-61AP012599.1 Vigna angularis mitochondrial DNA, complete sequence.
GenBankAP0147161e-61AP014716.1 Vigna radiata var. radiata mitochondrial DNA, complete sequence, cultivar: NM92.
GenBankAY2896551e-61AY289655.1 Pongamia pinnata maturase (matR) gene, partial cds; mitochondrial gene for mitochondrial product.
GenBankAY4530781e-61AY453078.1 Pisum sativum maturase (matR) gene, partial cds; mitochondrial.
GenBankGMU099881e-61U09988.1 Glycine max Williams 82 mitochondrion NADH dehydrogenase subunit I (nad1) gene, exons D and E, partial cds, and maturase-related protein (mat-r) gene, complete cds.
GenBankGU3511451e-61GU351145.1 Albizia julibrissin MatR (matR) gene, partial cds; mitochondrial.
GenBankGU3512461e-61GU351246.1 Medicago sativa MatR (matR) gene, partial cds; mitochondrial.
GenBankHM3676851e-61HM367685.1 Vigna radiata mitochondrion, complete genome.
GenBankJN8725501e-61JN872550.1 Millettia pinnata mitochondrion, complete genome.
GenBankJN8725511e-61JN872551.2 Lotus japonicus strain MG-20 mitochondrion, complete genome.
GenBankKT4589951e-61KT458995.1 Psoralidium tenuiflorum voucher Jones_1026 MatR gene, complete cds; mitochondrial.
GenBankKT4589971e-61KT458997.1 Senna marilandica voucher Ahrendsen_50 MatR gene, complete cds; mitochondrial.
GenBankKT4590001e-61KT459000.1 Vicia americana var. minor voucher Ahrendsen_17 MatR gene, complete cds; mitochondrial.
GenBankKT4590011e-61KT459001.1 Vicia villosa voucher Jones_1019 MatR gene, complete cds; mitochondrial.
GenBankKT9713391e-61KT971339.1 Medicago truncatula mitochondrion, complete genome.
GenBankVFAMTNADI1e-61M30176.1 Vicia faba NADH dehydrogenase (nad1) gene, partial cds; nad1 gene, complete cds; and maturase-related protein (mat-r) gene, partial cds; mitochondrial genes for mitochondrial products.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465930.11e-119transcription factor MYB36
TrEMBLA0A072VEE81e-118A0A072VEE8_MEDTR; Myb transcription factor
STRINGXP_004498932.11e-118(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-66myb domain protein 84