PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13402
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 236aa    MW: 25311.6 Da    PI: 5.5258
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13402genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_176.53.4e-24153215163
                                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                ++elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v++L +eN++L++el++l++e++kl+se+
  Tp57577_TGAC_v2_mRNA13402 153 DRELKRQKRKQSNRESARRSRLRKQAECEELQKRVEALGGENRTLREELQKLSEECEKLTSEN 215
                                689**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165963.1E-817127No hitNo description
Gene3DG3DSA:1.20.5.1703.8E-18150212No hitNo description
SMARTSM003387.6E-22153217IPR004827Basic-leucine zipper domain
PfamPF001709.8E-22154215IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.369155218IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.5E-11156212No hitNo description
CDDcd147029.34E-20158208No hitNo description
PROSITE patternPS000360160175IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MHQTTEFEGK GLDGKDKDSS KKPKGTSANT GAKAGESGKA GSGSGNDGFS QSGESGSEGS  60
SNGSDENQQE SARNKKGGFD LMLVNGANVQ NNNTGPISQS PVPGNPVVSI PATNLNIGMD  120
LWNASPANAE ATKLRHNQSS APGAGEQWMQ QDDRELKRQK RKQSNRESAR RSRLRKQAEC  180
EELQKRVEAL GGENRTLREE LQKLSEECEK LTSENNSIKE ELERLCGPEV VANLE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169175RRSRLRK
2169176RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13402
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ9117780.0HQ911778.1 Medicago sativa cultivar Zhongmu No.1 transcription factor bZIP (ZIP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003629480.11e-135G-box-binding factor 1 isoform X1
RefseqXP_024629610.11e-135G-box-binding factor 1 isoform X1
SwissprotP427743e-55GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A2K3NQ441e-168A0A2K3NQ44_TRIPR; G-box-binding factor 1-like protein
STRINGAET039561e-134(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59333450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.17e-47G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]