PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13367
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family SBP
Protein Properties Length: 397aa    MW: 44164.5 Da    PI: 7.9924
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13367genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.84.7e-41100176278
                                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                C v+gC+adls++++yhrrhkvCe hsk+++v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+qa
  Tp57577_TGAC_v2_mRNA13367 100 CLVDGCQADLSNCRDYHRRHKVCELHSKTAQVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQA 176
                                **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.3E-3393161IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.79597174IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-3898179IPR004333Transcription factor, SBP-box
PfamPF031102.2E-30100173IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEWNNLKAPS WDLTEMDQTT LNNIETMDGS KRFGDYRTQR EFSVDLKLGH VGNSSTESVV  60
TKSKDVVGGV SKMTSSSSST GSGSSKRARA INNGTQIVSC LVDGCQADLS NCRDYHRRHK  120
VCELHSKTAQ VTIGGHKQRF CQQCSRFHSL EEFDEGKRSC RKRLDGHNRR RRKPQAEPIT  180
RSSSFLSNYQ GTQLLPFSSS HIYPSTAMVN PTWGGGDVRL HNHNQHQPMH HHHHLVEKQD  240
LFLGTSSSPN SSYRGSSTNQ NTIATLNNNN QHLPAGLSQT FHRNTTNPFS ERCKMFCENN  300
NNTSCALSLL SSSVPPQTHD HPENGLNHMV NTHSSFMQPL GLSLHDHSLG SVDSVLGSND  360
QNAHCSSMYN MGSNDQSHSH EGNHNEAPPL FPFQWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-281001731184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156173KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13367
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024628066.10.0squamosa promoter-binding-like protein 13A isoform X1
RefseqXP_024628067.10.0squamosa promoter-binding-like protein 13A isoform X2
SwissprotB9DI201e-67SP13A_ARATH; Squamosa promoter-binding-like protein 13A
SwissprotP0DI111e-67SP13B_ARATH; Squamosa promoter-binding-like protein 13B
TrEMBLA0A2Z6MMN70.0A0A2Z6MMN7_TRISU; Uncharacterized protein
STRINGXP_004503742.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-67SBP family protein
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]