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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Tp57577_TGAC_v2_mRNA13264 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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| Family |
BBR-BPC |
| Protein Properties |
Length: 306aa MW: 34075.4 Da PI: 9.5407 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp57577_TGAC_v2_mRNA13264 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 59.4 | 1.7e-18 | 16 | 171 | 1 | 141 |
GAGA_bind 1 mdddgsre..rnkg.yye...............paaslkenlglqlmssiaerdaki..rernlalsekkaavaerdmaflqrd 64
mddd ++e r+k +y+ ++++l +++++ s++aer+a++ e ++a+sek++a+a+rd a+ qrd
Tp57577_TGAC_v2_mRNA13264 16 MDDDHQYEngRHKVeFYRgahspwntdpqhqikEQNALV--MNKKIRSIMAERQAALleLELEAAISEKNEALAARDAALRQRD 97
88888887799999899899****999765553224455..999************977677889******************* PP
GAGA_bind 65 kalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaa 141
+ala+r++al+erdn+l+al+ ++ + s+ p++ ++ +g+k ++++ + + ++++++a+ + + + +a p+++ +
Tp57577_TGAC_v2_mRNA13264 98 EALAQRDNALLERDNALAALQSRSGA--SNFPFNGGIQRGSKRMHHSSN-HISNISEPAYSTADIIIRDASPVTSPT 171
*********************97665..88999************8887.6699******99999988888887655 PP
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| 2 | GAGA_bind | 250 | 1.5e-76 | 169 | 305 | 163 | 301 |
GAGA_bind 163 kakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPv 246
+k kk +e+ ++k +e+ ++ k+e++ +d++ln +++De+ +PvPvCsCtG++rqCYkWGnGGWqS+CCttt+S++PLP+
Tp57577_TGAC_v2_mRNA13264 169 SPTKIKKLGEDLNRKAYSEG--TKIKSEWDRQDVGLNLIAFDETVMPVPVCSCTGVPRQCYKWGNGGWQSSCCTTTLSMHPLPQ 250
45678888888888888887..67************************************************************ PP
GAGA_bind 247 stkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+++r+aRi+grKmS+++f +lL++ a++G+dls p+DLkd+WA+HGtn+++ti+
Tp57577_TGAC_v2_mRNA13264 251 LPNKRHARIGGRKMSGSVFIRLLSRFASQGHDLSIPLDLKDYWARHGTNRYITIK 305
******************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 306 aa
Download sequence Send
to blast |
LNPTTASVAK SSESKMDDDH QYENGRHKVE FYRGAHSPWN TDPQHQIKEQ NALVMNKKIR 60
SIMAERQAAL LELELEAAIS EKNEALAARD AALRQRDEAL AQRDNALLER DNALAALQSR 120
SGASNFPFNG GIQRGSKRMH HSSNHISNIS EPAYSTADII IRDASPVTSP TKIKKLGEDL 180
NRKAYSEGTK IKSEWDRQDV GLNLIAFDET VMPVPVCSCT GVPRQCYKWG NGGWQSSCCT 240
TTLSMHPLPQ LPNKRHARIG GRKMSGSVFI RLLSRFASQG HDLSIPLDLK DYWARHGTNR 300
YITIK*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
