PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13247
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 263aa    MW: 28769.1 Da    PI: 6.7116
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13247genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.3e-11110154554
                                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + v+Y+k L
  Tp57577_TGAC_v2_mRNA13247 110 HSIAERLRRERIAERMKALQELVPSiN------KTDKAAMLDEIVDYVKFL 154
                                99***********************77......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.25E-12103159No hitNo description
SuperFamilySSF474593.79E-16103164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.729105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15107165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-8110154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-12111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSGYMHAVYV RQECQDIWFQ LLFLGVHRFN AHEGFVFNVW TIAYSYSCST CTSHAPISTS  60
STPTPSSPST PTALSEPAAK SSVCYSHATS PWHPPXXXXX XRRGQATDPH SIAERLRRER  120
IAERMKALQE LVPSINKTDK AAMLDEIVDY VKFLRLQVKV LSMSRLGGAG AVAQLVADVP  180
VSAVEGDDLE SGANQQAWAK WSNDGTEQQV AKLMEEDVGA AMQLLQSKAL CIMPISLASA  240
IFRMPQSDTS TIIKPESNNS HS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114119RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13247
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012569985.11e-105transcription factor UNE12-like isoform X1
RefseqXP_012569986.11e-105transcription factor UNE12-like isoform X2
SwissprotO227681e-71UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2K3ND771e-111A0A2K3ND77_TRIPR; Transcription factor UNE12-like protein
STRINGXP_004496017.11e-102(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.34e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]