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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA13199 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 787aa MW: 90935.6 Da PI: 8.9817 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 52.7 | 1.4e-16 | 42 | 132 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkek.dgkw 76 +fYn++Ak++GF vr++++k + ++ +vC +eg++ ++++ t++++r+ +++r gC+a+l v++ + +g+w Tp57577_TGAC_v2_mRNA13199 42 EFYNSFAKRLGFGVRVRSTKPK-------RAILVCCNEGQHMMKSSRnkeiqydTNQAKRKCSTQRSGCQASLIVSRGTtEGNW 118 6***************987766.......677899999988777766778999999999******************999**** PP FAR1 77 evtkleleHnHela 90 + +++++HnH+++ Tp57577_TGAC_v2_mRNA13199 119 IICSFNNDHNHDMV 132 ***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.2E-14 | 42 | 132 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50811 | 8.536 | 73 | 132 | IPR003657 | WRKY domain |
Pfam | PF10551 | 1.0E-35 | 249 | 343 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 3.0E-7 | 530 | 565 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.373 | 530 | 566 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0042 | 541 | 568 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 787 aa Download sequence Send to blast |
MPVEVEISHE NISTGSYPNV SEELNSEPYI GMEFKTVEKV REFYNSFAKR LGFGVRVRST 60 KPKRAILVCC NEGQHMMKSS RNKEIQYDTN QAKRKCSTQR SGCQASLIVS RGTTEGNWII 120 CSFNNDHNHD MVSPRSVSYM RCHKRMSTAA KSLVEQFKEE GIPTGKVATI FNNGDLAFSN 180 RDCWNHIQKL RSKNLDVGDA QAVFNYCKKK QVQNPNFFYS IQCDEESRMI NFFWVDARSR 240 LAYQQFGDVI TFDTTYKTNK YSMPFAPFVG LNNHYQSILF GCALLQDESE SSFIWLFKTF 300 LEAMDGKKPV SVITDQDLAM KAALAKVFPE TRHRLCLWHI RKKFPEKLAH IYHKKSIFKR 360 DLKRCIHGSP SIQSFEEEWR RLMIEYDLDK NEWLQGLYKI RESWVPVYNR SNFFAGMNTT 420 QRSESINSFF DSFVNASTTL QEFVSKFEKA VDSRLEAEKR EDYKSRHKCR ILTTGSKLEE 480 HAGSIYTRNI FCKFQEELAK INQFTKKKIK KDGPPYIYQV SNCYDARDVY NVNIDFDTKI 540 AKCECQLYEF FGILCRHILT IFQAKGVIQI PSHFILQRWT KDANKGIEVC YTRCNFDGQT 600 STSKILRRMH AQQETKVLVD LAEDSDEIYK FIMSELSHTR MSAIAMKESN LPVDDGISPL 660 ESSQNVDQIC LSDEESEPPH IKSPHMSQTK GRKKDGDKTT QNSRLKGGLE LSLTKSLIMI 720 IVSQNLIGVT NLRRSSRLMQ LQSANPVIEK MADEASNDQQ PSKQAKTSEK KSEEKQRFSC 780 VRFFIY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA13199 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024634520.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2Z6P1T9 | 0.0 | A0A2Z6P1T9_TRISU; Uncharacterized protein | ||||
STRING | GLYMA15G20510.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-161 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA13199 |