PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13057
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 313aa    MW: 36127.2 Da    PI: 6.7985
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13057genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-162774148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg+WT +Ed+ l ++++ +G g+W+t a+  g++Rt+k+c++rw++yl
  Tp57577_TGAC_v2_mRNA13057 27 RGPWTMDEDLTLMNYIATHGEGRWNTLANSAGLKRTGKSCRLRWLNYL 74
                               89********************************************97 PP
2Myb_DNA-binding51.91.7e-1680123146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                rg+ T eE++l++++++++G++ W++Ia++++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA13057  80 RGNITLEEQLLILELHTRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 123
                                7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5052274IPR017930Myb domain
SuperFamilySSF466892.66E-3024121IPR009057Homeodomain-like
SMARTSM007177.9E-122676IPR001005SANT/Myb domain
PfamPF002491.9E-152774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-222881IPR009057Homeodomain-like
CDDcd001676.85E-92974No hitNo description
PROSITE profilePS5129423.27575129IPR017930Myb domain
SMARTSM007179.1E-1479127IPR001005SANT/Myb domain
PfamPF002491.9E-1480123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-2282127IPR009057Homeodomain-like
CDDcd001676.30E-7100123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDVKGRGNKN NLMMSSSDQE DEMDLRRGPW TMDEDLTLMN YIATHGEGRW NTLANSAGLK  60
RTGKSCRLRW LNYLRPDVRR GNITLEEQLL ILELHTRWGN RWSKIAQYLP GRTDNEIKNY  120
WRTRVQKLAK QLKCDVNSKQ FKDTMRYLWM PRLVERIQAA AVATTTTTTV ATNAIYNYTN  180
NINHSAKIMG STPTITNNEF VSSQPHMTQS YTLERSNTTA SSDSFENKVS TISDLGDNNH  240
NYYASFGNND NPNPNLDYYQ PSHQSSGLFY PEFDFQSMEP NTPWMQNGDS SDIFWNSENM  300
LFLQQQLMND TM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-252412124120MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13057
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458334.11e-162transcription factor MYB108
SwissprotQ9FGY31e-87MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A072V2Q61e-160A0A072V2Q6_MEDTR; Myb transcription factor
STRINGXP_004508108.11e-132(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.17e-86myb domain protein 108
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]