PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12679
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 444aa    MW: 49985 Da    PI: 5.1547
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12679genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.8e-08324325
                               S---SGGGGTS--TTTTT-SS-S CS
                    zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                               t+ C+f+ar G+C  Gd+C FaH
  Tp57577_TGAC_v2_mRNA12679  3 TRVCKFYAR-GICLKGDQCDFAH 24
                               899******.************* PP
2zf-CCCH283.8e-093353526
                               --SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                                C+++++ G C yG+rC++ H+
  Tp57577_TGAC_v2_mRNA12679 33 VCSYYQK-GSCAYGSRCRYKHV 53
                               7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.239127IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-7325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-6328IPR000571Zinc finger, CCCH-type
PfamPF156636.6E-8563No hitNo description
PROSITE profilePS5010314.2112855IPR000571Zinc finger, CCCH-type
SMARTSM003560.00132854IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-53052IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-53252IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.732112138IPR000571Zinc finger, CCCH-type
SMARTSM0035683112137IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.94E-13170247No hitNo description
Gene3DG3DSA:3.30.40.101.5E-10173242IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.90E-4179242No hitNo description
SMARTSM001841.3E-5180240IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.15180241IPR001841Zinc finger, RING-type
PfamPF000974.3E-7180240IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180204213IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010312.389270299IPR000571Zinc finger, CCCH-type
SMARTSM003560.86270298IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MSTRVCKFYA RGICLKGDQC DFAHQRKDIP VDVCSYYQKG SCAYGSRCRY KHVRASQASS  60
SASMVSDSAK VTSNWVPKVT KAPAPDKRGI KSLQRKHQDS SDVGESSTAS AKPHDIFCTY  120
AAANCPLGDG CSRVHGNQCL YCRKYCLHPT DKKEKESHLR TCDKKEKYLL ALKNSEEIEC  180
NVCLERVLSK PKPSDCKFGL LPECDHAFCL SCIRNWRNSA PTSGMEISSN SNTVRTCPVC  240
RKLSYFVIPS GIWFTTKEEK QEIIDNYKAN CRLIDCKHFD SGNGNCPFGA GCFYKHTVKP  300
GSYTWVHRRP PPQRRPNHYD MYDVLDMLSE VDLSSGEFYN IMRDSEFFDG MDPFEMMALS  360
DSLAGGSGPC LNPFDSDDEE NEFDVFRMAA MSEALASGVD DFGPDDFEDE FDPMEAALLS  420
MIMHSHMEDD NEDDEEEYSD DEY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12679
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1375040.0BT137504.1 Medicago truncatula clone JCVI-FLMt-21H19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003599125.10.0putative RING-type E3 ubiquitin transferase C3H69
SwissprotE0X9N41e-103C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A2K3P8P10.0A0A2K3P8P1_TRIPR; E3 ubiquitin-protein ligase makorin-like protein
STRINGAES693760.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151431113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.24e-99C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]