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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA12415 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | HSF | ||||||||
Protein Properties | Length: 206aa MW: 23956.4 Da PI: 6.1436 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 106.8 | 1.8e-33 | 31 | 126 | 2 | 102 |
HHHHHHHHHC....TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEE CS HSF_DNA-bind 2 Flkklyeile....deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweF 81 Fl k+y++le +++ +++sw+e+gn fvv+ + ef++ +Lp+yFkh+nf+SF+RQLn+YgFkk++++ weF Tp57577_TGAC_v2_mRNA12415 31 FLLKTYDLLEegseEKDGIKIVSWNEEGNGFVVWSPAEFSELILPRYFKHNNFSSFIRQLNTYGFKKTSSKI---------WEF 105 9*********66555566789**********************************************98765.........*** PP EESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 82 khksFkkgkkellekikrkks 102 kh++F+kg +++l +i+rkk Tp57577_TGAC_v2_mRNA12415 106 KHEKFQKGCRHMLVEINRKKC 126 ******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.5E-40 | 27 | 124 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.5E-27 | 28 | 124 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.1E-34 | 28 | 119 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.2E-29 | 31 | 124 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-9 | 73 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-9 | 86 | 98 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MELNFGTNSL DNFCSDQDGL SLKPLRCPAP FLLKTYDLLE EGSEEKDGIK IVSWNEEGNG 60 FVVWSPAEFS ELILPRYFKH NNFSSFIRQL NTYGFKKTSS KIWEFKHEKF QKGCRHMLVE 120 INRKKCEPSV FPQYLKSCSE ENAMTSSSVE ESINNHEILM EENKNLKKER LELQMQIAEC 180 KALEMKLLDC LSQYMDTSQN KVRRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5w_B | 1e-16 | 29 | 124 | 2 | 104 | Putative transcription factor |
5d5x_B | 1e-16 | 29 | 124 | 2 | 104 | Putative transcription factor |
5d5x_E | 1e-16 | 29 | 124 | 2 | 104 | Putative transcription factor |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA12415 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013457050.1 | 1e-128 | heat stress transcription factor B-2a | ||||
TrEMBL | G7ZZ89 | 1e-127 | G7ZZ89_MEDTR; Heat shock transcription factor | ||||
STRING | AES84527 | 1e-128 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11357 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 4e-36 | heat shock factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA12415 |