PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA12361

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 315aa MW: 34649.6 Da PI: 8.4692

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA12361	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113.6	8.4e-36	48	108	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprCdstntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGggr+++++++ Tp57577_TGAC_v2_mRNA12361 48 QSEHLNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRSKK 108 57889***********************************************987777654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-20	49	97	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-31	50	105	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.503	52	106	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	54	90	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MGLSSKQVIS SSGVDWKQTL LESQDLELPK PHHLMRKQQQ QQQQTQQQSE HLNCPRCDST 60 NTKFCYYNNY NKSQPRHFCR ACKRHWTKGG TLRNVPVGGG RKNKRSKKST TPVTSSTTTA 120 TTTCTTSIVA NNMNGGLNLN SNNLMIQNPL GVSDQKTIPS SLYQALIHPP SLLLQQNMMN 180 TRDLSESKDF GIGIGNDHHG NGVFTSTSSA LNLPHQNQSM IFPFSTSTSF DRTTCSSSNV 240 YYYGEEFKTM EEPAANTKPW EIPPAAAAAA AAAAAAAATT GGMEATKYWN WEDIDSLVST 300 DLKNPYWDDS DIKP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA12361

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT136829	1e-128	BT136829.1 Medicago truncatula clone JCVI-FLMt-15B3 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013457087.1	1e-139	dof zinc finger protein DOF1.4
TrEMBL	A0A2K3NFI6	0.0	A0A2K3NFI6_TRIPR; Dof zinc finger protein
STRING	XP_004505012.1	1e-130	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-25	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA12361