 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Tp57577_TGAC_v2_mRNA12360 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
| Family |
Trihelix |
| Protein Properties |
Length: 424aa MW: 48393.6 Da PI: 5.0978 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp57577_TGAC_v2_mRNA12360 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 26.2 | 2.1e-08 | 21 | 94 | 1 | 75 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75
+Wt e l L++ +e + + + + ++W+ +s ++++ + r+ qC+ kw++l +y +++g+k+ + +
Tp57577_TGAC_v2_mRNA12360 21 EWTVTESLILVNEIAAVEADCSVEFSSYQQWDIISGNCAALEVDRNLAQCRRKWRSLLAEYDDVRKGRKSS-NLD 94
599999999**9999*******9999****************************************99984.444 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 424 aa
Download sequence Send
to blast |
MTENPRAGTG NRRTRSQAAP EWTVTESLIL VNEIAAVEAD CSVEFSSYQQ WDIISGNCAA 60
LEVDRNLAQC RRKWRSLLAE YDDVRKGRKS SNLDPELFDA IGRVVKGREE RGEIDRESDA 120
EIGDEDLDAT VEIETGSKRK RQRSKPKRYR EEKPKESHEE QPENTHLEDQ YLKDLLGKKS 180
KLNSPAKRRA KYIETPPTSL AEVDKNHDTE EKPKPTSVXX XXXXXXXXXX XXXXXXXXXX 240
XXXXXXXXXX XSQSQPVRAK HIETPPTSLA EIDENHDIEE MPKPTSVGNI TNNNIRAENE 300
EMLKSKLKSP AKRRAKHIET PRTSLAEVDK NHDIEEKPTS VGNITNNNIR EENEEMLTLK 360
LQELAIEIQD INAESADCKE ANSENIEDYR TEFTRRQGDK LIARLGNFSN TLKQLCDLLQ 420
ECK*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 137 | 142 | KRKRQR |
| 2 | 137 | 147 | KRKRQRSKPKR |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC157646 | 1e-110 | AC157646.35 Medicago truncatula clone mth2-164p8, complete sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT4G31270.1 | 1e-33 | sequence-specific DNA binding transcription factors |
