PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12336
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 324aa    MW: 37162.3 Da    PI: 7.4252
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12336genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55.1e-055274123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               +kC++Cgk+Fs+   L  H r+H
  Tp57577_TGAC_v2_mRNA12336 52 HKCNICGKCFSNGKALGGHRRSH 74
                               79*******************99 PP
2zf-C2H218.55.6e-06115136223
                                EETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                +C +C+k F++k  L  H+r+H
  Tp57577_TGAC_v2_mRNA12336 115 RCYICNKKFPTKNALYGHMRSH 136
                                7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.03E-95074No hitNo description
Gene3DG3DSA:3.30.160.608.9E-55074IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0215274IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-65274IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.6555279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
SuperFamilySSF576673.03E-9109136No hitNo description
SMARTSM003550.0068114136IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-5114138IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723114136IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEKDDYEKPY IETEKKMKRS RSSLSSDEEE EEDDDANMMM KKKQEVIVQK SHKCNICGKC  60
FSNGKALGGH RRSHFLKKKP NLQKSPELKT PSKTIRVRFF NDDEDIDCKK NQITRCYICN  120
KKFPTKNALY GHMRSHPDRV CKGVSRPSNY DIQNSSSSNN SDKREDRDDD DDDGGDGNFS  180
LPKWKKRDKR GRKCIGSAEA ATNLLYLRSD THNCEVLGLN SKNSEFPLPI KKRDFFIGES  240
SSNGNGKKEF VVNKIKVVFG GSLKIENKSD WNGDDDDDHD HDEKKLKTSE GLCESRVDEK  300
PSNLSEEQNK FNFDLNEPYV MED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12336
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003620338.11e-80zinc finger protein 726
TrEMBLA0A2K3LN690.0A0A2K3LN69_TRIPR; Tapetum-specific zinc finger protein
STRINGAES765564e-80(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15181913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.12e-13C2H2 family protein