PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA12324

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NAC

Protein Properties

Length: 303aa MW: 34461.1 Da PI: 9.1921

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA12324	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	184.3	2.9e-57	16	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtdeel+++yL +kv+++++++ ++i evd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWk Tp57577_TGAC_v2_mRNA12324 16 LPPGFRFHPTDEELISHYLLRKVTDTNFSA-KAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWK 98 79*************************9.89***********888999************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atgkdke+++ +++lvg+kktLvfykgrapkgekt+Wvmheyrl Tp57577_TGAC_v2_mRNA12324 99 ATGKDKEIYR-GKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 141 ******.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.1E-65	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	60.251	16	166	IPR003441	NAC domain
Pfam	PF02365	5.1E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MENVSVMCKE EDQMDLPPGF RFHPTDEELI SHYLLRKVTD TNFSAKAIGE VDLNKSEPWD 60 LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK SLVGMKKTLV 120 FYKGRAPKGE KTNWVMHEYR LDGKLSIHNL PKTAKNEWVI CRVYQKSLSS KKTCFSGGIM 180 RLNSFGNELG SSILPPLTES SPYSIDKIKS PYVSCFSNPI ERNQVGIFNT FSNNPFDVHS 240 NHSINLPKNT LSIGSFYSNQ EVQTTPNLPL SGSVYNNGSN FENQQHLPVS TAPIDISTLW 300 NY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-58	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-58	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-58	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-58	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-57	13	172	17	174	NAC domain-containing protein 19
3swm_B	1e-57	13	172	17	174	NAC domain-containing protein 19
3swm_C	1e-57	13	172	17	174	NAC domain-containing protein 19
3swm_D	1e-57	13	172	17	174	NAC domain-containing protein 19
3swp_A	1e-57	13	172	17	174	NAC domain-containing protein 19
3swp_B	1e-57	13	172	17	174	NAC domain-containing protein 19
3swp_C	1e-57	13	172	17	174	NAC domain-containing protein 19
3swp_D	1e-57	13	172	17	174	NAC domain-containing protein 19
4dul_A	7e-58	13	172	14	171	NAC domain-containing protein 19
4dul_B	7e-58	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA12324

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013459264.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-128	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2Z6NKJ2	0.0	A0A2Z6NKJ2_TRISU; Uncharacterized protein
STRING	GLYMA17G10970.1	1e-153	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-130	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA12324

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]