PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12316
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 230aa    MW: 25868 Da    PI: 4.8093
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12316genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.91.1e-221865249
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               +++n   rqvtfskRr g++KKA+ELS+LC+aeva+++fs+ +k y +
  Tp57577_TGAC_v2_mRNA12316 18 SVKNPNTRQVTFSKRRSGLFKKANELSILCGAEVAIVMFSPGNKPYSF 65
                               789999***********************************9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-34968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.053969IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-28981IPR002100Transcription factor, MADS-box
CDDcd002651.90E-311079No hitNo description
PRINTSPR004041.1E-201131IPR002100Transcription factor, MADS-box
PfamPF003192.2E-251965IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-203146IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-204667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
LCETCERIMG RRKIEIESVK NPNTRQVTFS KRRSGLFKKA NELSILCGAE VAIVMFSPGN  60
KPYSFGHPGV DVVAAKYLQQ DPEPSDSEGD FSSDASNMDE LNLELDEVLA EIREGEKQTE  120
TYDEILKQNE VTTLSGLEEL KDLYKEFQDK VKLRLSDLEI SECMMLLAKE PVVGVNTKSA  180
KXXXXXXXXX XXNRCFSSLN QILVYVPFFK NKVCSFVSLK CCCPCSLFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-17990183MEF2C
5f28_B9e-17990183MEF2C
5f28_C9e-17990183MEF2C
5f28_D9e-17990183MEF2C
6byy_A8e-17990183MEF2 CHIMERA
6byy_B8e-17990183MEF2 CHIMERA
6byy_C8e-17990183MEF2 CHIMERA
6byy_D8e-17990183MEF2 CHIMERA
6bz1_A1e-16990181MEF2 CHIMERA
6bz1_B1e-16990181MEF2 CHIMERA
6bz1_C1e-16990181MEF2 CHIMERA
6bz1_D1e-16990181MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12316
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467229.14e-92agamous-like MADS-box protein AGL29
TrEMBLA0A2K3M4201e-121A0A2K3M420_TRIPR; Agamous-like mads-box protein agl61-like
STRINGXP_004504539.14e-89(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-39AGAMOUS-like 29