PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12210
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 346aa    MW: 39585.7 Da    PI: 7.9933
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12210genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.5e-181562148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT+eEd +lv +++++G+g+W++++++ g+ R+ k+c++rw +yl
  Tp57577_TGAC_v2_mRNA12210 15 KGPWTPEEDIILVSYIQEHGPGNWRSVPNRSGLMRCSKSCRLRWTNYL 62
                               79********************************************97 PP
2Myb_DNA-binding44.53.5e-1468113148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg++   E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Tp57577_TGAC_v2_mRNA12210  68 RGNFNDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 113
                                899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-23664IPR009057Homeodomain-like
PROSITE profilePS5129425.2831066IPR017930Myb domain
SuperFamilySSF466891.06E-2912109IPR009057Homeodomain-like
SMARTSM007177.6E-141464IPR001005SANT/Myb domain
PfamPF002492.8E-161562IPR001005SANT/Myb domain
CDDcd001671.68E-101762No hitNo description
Gene3DG3DSA:1.10.10.602.2E-2365118IPR009057Homeodomain-like
SMARTSM007173.6E-1467115IPR001005SANT/Myb domain
PROSITE profilePS5129418.11767117IPR017930Myb domain
PfamPF002491.3E-1268113IPR001005SANT/Myb domain
CDDcd001675.87E-970113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MMGRPPCCEK FGVKKGPWTP EEDIILVSYI QEHGPGNWRS VPNRSGLMRC SKSCRLRWTN  60
YLRPGIKRGN FNDHEEKMII HLQALLGNRW AAIASYLPQR TDNDIKNYWN THLRKKLKKV  120
QIQTGNDNEK EENTSPQVKG QWERRLQTDI HMAKQALCEA LSLNTPKPIL PAETNLTTEN  180
KTSPYASNTE NIARLLEKWM KKPENSDEVV TTGSSSSEGG QKGQAFDSLL SFNSFNSDCS  240
KSVSVEDNIN LTMDSCLFQY ESKPNLDSQV PFMFLEKWLF DDGAPQCNEE DLINISMEEN  300
SVGLFFKERG GTRRGEKKQN WFSERKNEEE DGRVMKVQTK HKIGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-25151174105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00235DAPTransfer from AT1G74650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003599668.21e-177myb-related protein 306
SwissprotP813921e-115MYB06_ANTMA; Myb-related protein 306
TrEMBLG7IZP91e-175G7IZP9_MEDTR; Putative transcription factor MYB-HB-like family
STRINGAES699191e-175(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74650.11e-111myb domain protein 31
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]