PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12188
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 1697aa    MW: 184300 Da    PI: 4.6071
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12188genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00018496518123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                y+C++Cg +F++++   +H r+H
  Tp57577_TGAC_v2_mRNA12188 496 YVCNKCGWPFPNPHPSAKHRRSH 518
                                9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
HamapMF_01106114.58863472IPR002813Arginine biosynthesis protein ArgJ
TIGRFAMsTIGR001201.9E-11966431IPR002813Arginine biosynthesis protein ArgJ
Gene3DG3DSA:3.60.70.123.4E-9267340IPR016117ArgJ-like domain
CDDcd021526.81E-16473425IPR002813Arginine biosynthesis protein ArgJ
SuperFamilySSF562661.2E-11174426IPR016117ArgJ-like domain
PfamPF019602.2E-12078427IPR002813Arginine biosynthesis protein ArgJ
ProDomPD0041933.0E-12987422No hitNo description
PROSITE profilePS501578.954496518IPR007087Zinc finger, C2H2
PROSITE patternPS000280498518IPR007087Zinc finger, C2H2
PROSITE profilePS5010427.87115131650IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF522007.72E-3915131653IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015822.4E-4315141654IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101401.3E-2115141625IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002551.5E-4415141650IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006526Biological Processarginine biosynthetic process
GO:0007165Biological Processsignal transduction
GO:0009570Cellular Componentchloroplast stroma
GO:0004358Molecular Functionglutamate N-acetyltransferase activity
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1697 aa     Download sequence    Send to blast
MYSCSMIPQQ HLSLHFHFST TSPNSKTFAA SRNNFKIRSV STTNNQASTY IPAAPIFLPE  60
GPWKQIPGGV TAAEGFKAAG IYGGLRAVGE KPDLALVTCD VDAISAGSFT TNVVAAAPVI  120
YCKTTLDISN TARAVLINAG QANAATGEAG YHDMIECVET LAKLLGVKAE EILVESTGVI  180
GQRIKKGALL NSLPLLVNSI SSSDEGADSA AVAITTTDLV SKSVAIESLV GRTKVRVGGM  240
AKGSGMIHPN MATMLGVITT DAGVTSDVWR KMVRVAVNRS FNQITVDGDT STNDTVIALA  300
SGLSGLSSIS SLDSDEAIQL QACLDAVMQG LAKSIAWDGE GATCLIEVSV TGANSEAEAA  360
KVARSVASSS LVKAAVYGRD PNWGRIAAAA GYSGVSFNQN LLRVELGDIL LMDGGEPQSF  420
DRQKVYVQLL MLWKGITLPL LLHKVKVVVI ENEDTLQHFE SVRYVKYFLF LSLFLFKFNA  480
HEGLFVFEGH ENHGVYVCNK CGWPFPNPHP SAKHRRSHKK ICGTIHGYKH QQTTPGLVVS  540
GSNNDNHGIE GKLIRSESEV YSDAATDFSD NGLSPGVKPI LQQGDNLDLD SGIDLERVNN  600
TKEHTLLGSS EDNDFNAADE SLSIANSSND CHIQNPKIPP SESFEVGNTV GSQGQFSVST  660
VDSLTSSIAD SKTEGSSIVH GDGFSGLSSD SSLSKAEAVP EVLSEKNIYA VENVTDSSLI  720
CDEKESNLKR SNEVKSERDM VEIVEPTNSI VNDGAVNPME NKGSEFVSLL PQNELPQEIN  780
SSIITNDTQL ESAHAIQSTT CSDVKVSQEK EDMNVNIDPL PVHDDKLDVA YSQSESLKPE  840
EDVTNGNDFH FNTSQLSERS HVISSDVRIL DGKMKADSED CSEVSLVELT TETYQRTHEI  900
GVSMKPEVNE NHFSEEDGPG DIDENSQPES SLMVSPNEYQ RETSFQSATD DTFNIINNDT  960
AEINDVSVDG NIVGANVEND TEVIVKDLQP SDLLQPEVEQ SSDLFRNNSD DAGETGKIEG  1020
EINSNIKLSE EHNKSTEQDA QLSVNAVGDL HEEQDAQLSV NAAEDSHEEQ DAQLSVNAAE  1080
NFSSKHTPHS STNTVSSVQL DSAVEDDTTG EPVQDQSNNN LVKLGSSGID TSADSLEARD  1140
AQLLVKAIED LASKYTSNSF INAETSAAED NSDEVTRITA VPLPVQDQKV NNLTKLTSPG  1200
TEASVDSGSR RDSLDGNWGS SSVISMISDA PAVLDGETFP STGPQASTEA SKSDVNIPQA  1260
APADRQLSGK SETFELPSFT TLVEPSHVAD GAAAASEIQN PQQSNSTSQA AWFPTLNQVI  1320
NEPQGRKKNE ETISKITKRS SSKEHTPLKS LLGEATHSSS KPKSPKIEEN NKGSGLTTVN  1380
SILGPESPSA AQTEKEKAAN EWNSPARYPA NIKREKKKLK SRPFWIQLVC CSTVDPQRRY  1440
YLLSIVFLVY LSLVLGEYFN VSNIVLARSF VVYVDHLQQK TQNQQEEIKN LSTLLPLLGQ  1500
NKFCYSAIAM SVRKHDVFLS FRGEDTRDNF TSHLYAELRR KNIETFIDNR LDRGEEISPA  1560
LYRAIEESKI YVIILSEHYA SSSWCLDELT EILKCKERYG KEVIPVFYKV DPSNVRHQVQ  1620
SYADDLGKHH QRFGGKVDAW KAALNQVAGF SGWDSQVTRS LIYFHALAIF IKLHFFCNLS  1680
FMRVVNFLCL DPYRNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1vz6_A5e-479140926331ORNITHINE ACETYL-TRANSFERASE
1vz6_B5e-479140926331ORNITHINE ACETYL-TRANSFERASE
1vz7_A5e-479140926331ORNITHINE ACETYL-TRANSFERASE
1vz7_B5e-479140926331ORNITHINE ACETYL-TRANSFERASE
1vz7_C5e-479140926331ORNITHINE ACETYL-TRANSFERASE
1vz7_D5e-479140926331ORNITHINE ACETYL-TRANSFERASE
1vz8_A5e-479140926331ORNITHINE ACETYL-TRANSFERASE
1vz8_B5e-479140926331ORNITHINE ACETYL-TRANSFERASE
1vz8_C5e-479140926331ORNITHINE ACETYL-TRANSFERASE
1vz8_D5e-479140926331ORNITHINE ACETYL-TRANSFERASE
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12188
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1436580.0BT143658.1 Lotus japonicus clone JCVI-FLLj-8D19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446614.10.0uncharacterized protein LOC25501782 isoform X1
TrEMBLA0A2K3NXR90.0A0A2K3NXR9_TRIPR; Serine-rich adhesin for platelets-like protein