PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA12114 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | bHLH | ||||||||
Protein Properties | Length: 320aa MW: 36103.9 Da PI: 7.2233 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.5 | 2.1e-12 | 137 | 180 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + Er+RR+ri++++++Lr+l+P+ + ++ a+iL A+eYIk+Lq Tp57577_TGAC_v2_mRNA12114 137 ITERNRRKRIKTGLFTLRSLVPNI-----TMMDRAAILGDAIEYIKELQ 180 68*********************6.....58*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.98 | 130 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-14 | 132 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.91E-11 | 133 | 183 | No hit | No description |
SMART | SM00353 | 1.8E-12 | 136 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.3E-10 | 137 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-14 | 137 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 1.9E-4 | 252 | 311 | No hit | No description |
SuperFamily | SSF55021 | 2.29E-5 | 252 | 313 | No hit | No description |
PROSITE profile | PS51671 | 9.239 | 253 | 319 | IPR002912 | ACT domain |
CDD | cd04873 | 6.20E-5 | 253 | 318 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MEFISAHCFV SINQEAISAQ SYTNMNFNEH CYTLNPGLAG ENHSSSNPGI EGPSNGSNPS 60 TEHLSFDSNF GCLIPHEYLN QPVKISPVPK VKCRRYNNTS AKCQSSLSFH SGNGEEDKEK 120 IYRGEPKKEV YHAKNLITER NRRKRIKTGL FTLRSLVPNI TMMDRAAILG DAIEYIKELQ 180 RQEIELQDEV KALEVEDCEK NTLQFRVKRD NEQEEGTKSL PLTAIKQNSS DSTRNTQMKL 240 QVEVNRIGRT DFMIKLCCEH KQGGFSRLME AIDSFGLNMV NANMTTFDGK VLNILMVEAT 300 AQDISATKLR EYLIKHLTS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA12114 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013445993.1 | 1e-127 | transcription factor bHLH90 | ||||
TrEMBL | A0A2K3NRM8 | 0.0 | A0A2K3NRM8_TRIPR; Putative transcription factor ABORTED MICROSPORES-like protein | ||||
STRING | XP_004509816.1 | 1e-118 | (Cicer arietinum) | ||||
STRING | GLYMA08G39470.2 | 1e-117 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12265 | 30 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 3e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA12114 |