PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12072
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 372aa    MW: 41158.7 Da    PI: 7.4485
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12072genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.6e-18216270256
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                rk+ +++k+q   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Tp57577_TGAC_v2_mRNA12072 216 RKKLRLSKDQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 270
                                678899***********************************************98 PP
2HD-ZIP_I/II127.55.9e-41216306192
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke 
  Tp57577_TGAC_v2_mRNA12072 216 RKKLRLSKDQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKEL 299
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreelk 92 
                                +eLr +lk
  Tp57577_TGAC_v2_mRNA12072 300 QELR-ALK 306
                                ***9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.2E-5123157IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.603.0E-18197273IPR009057Homeodomain-like
SuperFamilySSF466891.07E-18206273IPR009057Homeodomain-like
PROSITE profilePS5007117.07212272IPR001356Homeobox domain
SMARTSM003894.0E-16214276IPR001356Homeobox domain
CDDcd000862.65E-16216273No hitNo description
PfamPF000462.0E-15216270IPR001356Homeobox domain
PROSITE patternPS000270247270IPR017970Homeobox, conserved site
PfamPF021835.7E-11272306IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.8E-24272315IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MELGLSLGDS SKPLIGLMEK HPHEASKELG LGFNTTLSIG PINTAQRDQL QEEEEDDEKT  60
KRXXXXXXXX XXXXXXTLYY CISLIFFLNS HYHGILLLKM VITHFLKSYQ IGRLLPTEFG  120
GSSRGLDVNV VPPVTAVVMA DDEATLSSSP NSAASSFQMD LCIYNQGGSG GRGGGSLSGS  180
GGNKREFSDG DGEGYDQRNC SRASDEDDNC GGGNTRKKLR LSKDQSAFLE ESFKEHHTLN  240
PKQKLALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEY LKRCCETLTE ENRRLHKELQ  300
ELRALKTSNP FQMQLPATTL TMCPSCERVA TNSTATSSVT TNTTINANNK TSDDSTSKVN  360
IGFPFGKPRL N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214220TRKKLRL
2264272RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12072
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1181150.0DQ118115.2 Medicago sativa type II homeodomain-leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595805.11e-157homeobox-leucine zipper protein HOX11
SwissprotQ6YPD01e-84HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBLG7IJ301e-155G7IJ30_MEDTR; Homeobox associated leucine zipper protein
STRINGAES660561e-156(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23353382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-64homeobox from Arabidopsis thaliana