PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12052
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 962aa    MW: 107892 Da    PI: 7.4152
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12052genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.54.4e-1358130288
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                                fY+eYAk+ GFs +   + + + +g+ + r+fvCs+eg +++ +++              C a+l+++++ ++kw+vtk++  H
  Tp57577_TGAC_v2_mRNA12052  58 FYSEYAKRSGFSSKAGLHGQFNADGTNMFREFVCSMEGLKRRMTES--------------CGAMLRIEQKGQNKWVVTKFVRGH 127
                                ***************************************9997766..............************************ PP

                       FAR1  86 nHe 88 
                                +H+
  Tp57577_TGAC_v2_mRNA12052 128 SHA 130
                                **7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-958130IPR004330FAR1 DNA binding domain
PfamPF105511.4E-24273360IPR018289MULE transposase domain
PROSITE profilePS5096611.338551587IPR007527Zinc finger, SWIM-type
PfamPF044343.3E-10551584IPR007527Zinc finger, SWIM-type
SMARTSM005757.8E-8562589IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 962 aa     Download sequence    Send to blast
MDVHVITIGE GSGSMENNGH VELEVNDVGN SGSHAEDVVS SEPYLGMVFD SEDSAKTFYS  60
EYAKRSGFSS KAGLHGQFNA DGTNMFREFV CSMEGLKRRM TESCGAMLRI EQKGQNKWVV  120
TKFVRGHSHA TEVPDRVEKL RPRKHFSSVG RTMPETYKGV GLVPTGVMYI SIDGHHVSSE  180
NSHKIRNFPA VAGGKTSHPV KNTTSTTYTV RKPIQKKTLG RDAPNLLEYF KKVQAENPGF  240
FYAIQLDEDN RMSNVFWADA RSRTAYSHFG DAVTLDTTHR ANQYNVPYAP FTGINHHGQM  300
ILFGCALLFD DSEASFSWLF KTFLAAMNDH HPISITTDQD RSIQKAVSKV FPQARHCINK  360
RYVLREGHEK LGHVCRMHPY FHYELYNCIN LTETIEEFDF SWNSIIDKYE LRGHDWLRSL  420
YSARDQWVPA YFRDSFFAVL SPNQGFEASF LDGFVNRHTT LPMFFRQYEL ALERWFEKEI  480
ESDFETISTT PVLKTPSPME NQVAKLYTQK VFLKFQEELV ETFAYTANSI EEDGGNSIFR  540
VAKFEDDQKS YTVTLNHSEL RANCSCQMFE FSGILCRHVL TVFTVSNVFT IPSHYILKRW  600
TREAKSGVAL DGCGGDSLAH ESLTSRYTNL CREAIRYAED GAVAMETYDA AMGALREGGK  660
KIAVTKKNIA KVSPTNHRVS GNAGADKKTH ASTSDTSTAL LLWPPNDETT GFNLNDAGAP  720
VQPVADLNLP QTTPMPHKSH KRVDVPPPVH HQRVDSPSPV PRQRDDSPRP VPRRRVDGPS  780
PMPRQRDDSP PPVPRRRVDG PSPMPRQRDD SPPPVPLQQD DGPPENTVVL PCLKSMTWVM  840
ENKTSSPENK VAVINLKLQD YSKSPSSEYE VKFHLSRGTV GPVLQSMTEV SEQLSTTANK  900
VAVINLKLED AQASGESEVK FQVSRDALGA VLRSMAYIRE QLSGAVTGDV HSEPVSKKHR  960
K*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12052
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9317340.0CR931734.2 Medicago truncatula chromosome 5 clone mth2-62m24, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640285.10.0protein FAR1-RELATED SEQUENCE 3-like
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A396HY690.0A0A396HY69_MEDTR; Putative transcription factor FAR family
STRINGXP_004491167.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]