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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA12016 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 129aa MW: 14285.2 Da PI: 11.4265 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.5 | 2.2e-20 | 42 | 91 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a+++a+ +++g Tp57577_TGAC_v2_mRNA12016 42 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDRAAFQFRG 91 69*******.**********8...557***********************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.76E-32 | 41 | 99 | No hit | No description |
SuperFamily | SSF54171 | 3.33E-23 | 42 | 101 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-14 | 42 | 91 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.96 | 42 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-39 | 42 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-32 | 42 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-11 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-11 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MDNPHSTYVT ININMAPKVK SGGVKVNANG NININGGVKE AHFRGVRKRP WGRYAAEIRD 60 PGKKSRVWLG TFDTAEEAAR AYDRAAFQFR GLKAKTNFPF NNIQSXXXXX LNLPAVTVTL 120 PPILRRLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-24 | 38 | 100 | 1 | 64 | ATERF1 |
3gcc_A | 4e-24 | 38 | 100 | 1 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA12016 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC155157 | 5e-58 | AC155157.1 Medicago truncatula chromosome 2 BAC clone mth2-53f22, complete sequence. | |||
GenBank | BT137967 | 5e-58 | BT137967.1 Medicago truncatula clone JCVI-FLMt-2J8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004485813.1 | 2e-41 | ethylene-responsive transcription factor 4 | ||||
Swissprot | Q9LW49 | 8e-36 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A2K3LPR8 | 1e-67 | A0A2K3LPR8_TRIPR; Ethylene-responsive transcription factor 4-like protein | ||||
STRING | XP_004485813.1 | 7e-41 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-26 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA12016 |