PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA11933 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | GATA | ||||||||
Protein Properties | Length: 319aa MW: 35250.7 Da PI: 8.3796 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.9 | 3.3e-19 | 223 | 256 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C +tkTp+WR+gp g+ktLCnaCG++yr+ + Tp57577_TGAC_v2_mRNA11933 223 CTHCEVTKTPQWREGPKGPKTLCNACGVRYRSGR 256 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.7E-17 | 217 | 267 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.6E-14 | 217 | 277 | No hit | No description |
PROSITE profile | PS50114 | 11.846 | 221 | 253 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 8.2E-15 | 221 | 254 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.90E-16 | 222 | 269 | No hit | No description |
Pfam | PF00320 | 4.1E-17 | 223 | 256 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 223 | 248 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MPEDIPNMKD SWFFDKNFNG LEDEVFDDVL QFFDFPLEDV ETNPVEEDWS ALGEPCFDVF 60 PEPPVGLCAK PKIENPQLGN GFSAPCNEIS PMIKVPRTAG PAYGKTLPNN GSFFEKKVVL 120 QYSPVSVFEG SSASSGENSS FDLPVIPVKR PRSKRRRPSS SNPVFSLSFI ANPSAFQKYL 180 KTPASDSDLN RVKKQRKKDD SVLSGDAETK RSSSQESAII RKCTHCEVTK TPQWREGPKG 240 PKTLCNACGV RYRSGRLYPE YRPANSPTYV ESVHSNCHKK VLEMRGVVVK EGVRGRSMLA 300 SSTLSGNSVG QQHSHGSY* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00130 | DAP | Transfer from AT1G08010 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA11933 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597258.1 | 1e-166 | GATA transcription factor 11 | ||||
TrEMBL | A0A2K3N2Y9 | 0.0 | A0A2K3N2Y9_TRIPR; GATA transcription factor 11-like protein | ||||
STRING | AES67509 | 1e-165 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5758 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08010.2 | 1e-41 | GATA transcription factor 11 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA11933 |