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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA11769 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C3H | ||||||||
Protein Properties | Length: 219aa MW: 24423.6 Da PI: 9.0197 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22 | 2.9e-07 | 37 | 59 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C Gd+C FaHg Tp57577_TGAC_v2_mRNA11769 37 NPCPEFRKLGNCTKGDSCYFAHG 59 59********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 7.06E-6 | 32 | 63 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-6 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.798 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.3E-4 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-5 | 37 | 59 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 27 | 69 | 92 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
VRKCQRGRSH DWTECPYSHP GEKARRRDPQ KYNYSGNPCP EFRKLGNCTK GDSCYFAHGV 60 FECWLHPSRY RTQLCNDGTA CRRRVCFFAH TINQLRISTK ASPESFVSSP TSVLDSPTGK 120 SRHSVVPVNV QELVGFMQET RVDDPGRVLQ MGCVFGSPRG GFLSLPSTSE GVIMERVESG 180 RDLRAKIYAK FSRMNSNSND GVVSVPVPDI GWVSELVN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA11769 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003603107.1 | 1e-130 | zinc finger CCCH domain-containing protein 20 | ||||
Swissprot | Q9M0G2 | 9e-62 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A2Z6N5E3 | 1e-141 | A0A2Z6N5E3_TRISU; Uncharacterized protein | ||||
STRING | AES73358 | 1e-130 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2056 | 31 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 4e-64 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA11769 |
Publications ? help Back to Top | |||
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